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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon E-plasma EplasmaContig2057
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664234 (13 seq.)
>WENV181292295
OFHE01000049
[OFHE] soil metagenome; Clay
8662
8591
-
Ala
CGC
[ENA]
¢þ
>WENV181295028
OFHI01000007
[OFHI] soil metagenome; Clay
45234
45305
+
Ala
CGC
[ENA]
¢þ
>WENV181295808
OFHJ01000762
[OFHJ] soil metagenome; Clay
2812
2741
-
Ala
CGC
[ENA]
¢þ
>WENV170013401
AUZX01002810
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
271
342
+
Ala
CGC
[ENA]
¢þ
>At1986
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1556308
1556379
+
Ala
CGC
[Ensembl]
¡û
>At2054
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1569162
1569091
-
Ala
CGC
[Ensembl]
¡û
>ENV09002038
ACXJ01007511
Mine drainage metagenome Contig1
293
364
+
Ala
CGC
[ENA]
¡û
>ENV09002042
ACXJ01007766
Mine drainage metagenome Contig1
560
489
-
Ala
CGC
[ENA]
¡û
>ENV09002134
ACXJ01010306
Mine drainage metagenome Contig1
1771
1842
+
Ala
CGC
[ENA]
¡û
>ENV09002135
ACXJ01010319
Mine drainage metagenome Contig1
796
725
-
Ala
CGC
[ENA]
¡û
>ENV09002282
ACXK01000051
Thermoplasmatales archaeon A-plasma AplasmaContig10144
745
674
-
Ala
CGC
[ENA]
¡û
>ENV09002317
ACXL01000013
Thermoplasmatales archaeon E-plasma EplasmaContig2057
210009
210080
+
Ala
CGC
[ENA]
¡û
>W1610046683
BBCP01000007
Unclassified
Thermogymnomonas acidicola JCM 13583 [BBCP]
5909
5838
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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