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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = GCA
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235166 (4 seq.)
>A179000277
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
610625
610534
-
Cys
GCA
-
¡û
>A179000284
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
610625
610534
-
Cys
GCA
-
¡û
>A179000461
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
560694
560603
-
Cys
GCA
-
¡û
>At0456
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
610622
610531
-
Cys
GCA
[Ensembl]
¡û
Identical group No.242124 (1 seq.)
>At0491
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
142570
142457
-
Cys
GCA
[Ensembl]
¡û
Identical group No.244872 (2 seq.)
>A17A000460
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
62218
62322
+
Cys
GCA
-
¡û
>A179000169
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
62218
62321
+
Cys
GCA
-
¡û
Identical group No.244875 (2 seq.)
>A17A000086
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
890914
890811
-
Cys
GCA
-
¡û
>A17A000815
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1011922
1011819
-
Cys
GCA
-
¡û
Identical group No.244882 (2 seq.)
>A178000011
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1331173
1331078
-
Cys
GCA
-
¡û
>At0047
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1391457
1391362
-
Cys
GCA
[Ensembl]
¡û
Identical group No.244903 (2 seq.)
>A179000048
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
890914
890812
-
Cys
GCA
-
¡û
>A179000361
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1011922
1011820
-
Cys
GCA
-
¡û
Identical group No.245523 (1 seq.)
>At0308
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
160958
160848
-
Cys
GCA
[Ensembl]
¡û
Identical group No.248084 (2 seq.)
>A178000384
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
573523
573617
+
Cys
GCA
-
¡û
>A178000429
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1526043
1526137
+
Cys
GCA
-
¡û
Identical group No.252767 (2 seq.)
>A179000381
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
1237616
1237729
+
Cys
GCA
-
¡û
>A17A000936
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
1237616
1237730
+
Cys
GCA
-
¡û
Identical group No.256476 (1 seq.)
>A17A000605
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
127896
127788
-
Cys
GCA
-
¡û
Identical group No.256487 (1 seq.)
>A179000291
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
127896
127788
-
Cys
GCA
-
¡û
Identical group No.259881 (2 seq.)
>A17A000945
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
1237718
1237617
-
Cys
GCA
-
¡û
>A179000386
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
1237718
1237618
-
Cys
GCA
-
¡û
Identical group No.259886 (1 seq.)
>A178000131
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1023358
1023460
+
Cys
GCA
-
¡û
Identical group No.261587 (1 seq.)
>At2199
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
56438
56542
+
Cys
GCA
[Ensembl]
¡û
Identical group No.261604 (1 seq.)
>At0402
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1106557
1106680
+
Cys
GCA
[Ensembl]
¡û
Identical group No.262393 (1 seq.)
>A17A000427
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1275854
1275730
-
Cys
GCA
-
¡û
Identical group No.262397 (2 seq.)
>A17A000493
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
994098
993993
-
Cys
GCA
-
¡û
>A179000202
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
994098
993994
-
Cys
GCA
-
¡û
Identical group No.262401 (1 seq.)
>A178000392
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
334831
334728
-
Cys
GCA
-
¡û
Identical group No.262404 (1 seq.)
>A179000161
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1275854
1275730
-
Cys
GCA
-
¡û
Identical group No.265383 (2 seq.)
>A17A000256
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
374925
375013
+
Cys
GCA
-
¡û
>A179000101
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
374925
375013
+
Cys
GCA
-
¡û
Identical group No.268754 (1 seq.)
>At0174
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
166445
166334
-
Cys
GCA
[Ensembl]
¡û
Identical group No.281497 (1 seq.)
>At0544
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
226355
226268
-
Cys
GCA
[Ensembl]
¡û
Identical group No.306755 (3 seq.)
>At0212
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
2028602
2028700
+
Cys
GCA
[Ensembl]
¡û
>At0276
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1786437
1786342
-
Cys
GCA
[Ensembl]
¡û
>At0371
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1695782
1695674
-
Cys
GCA
[Ensembl]
¡û
Identical group No.321785 (2 seq.)
>A171000174
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
802387
802311
-
Cys
GCA
-
¡û
>W1610000387
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
529850
529926
+
Cys
GCA
[ENA]
¡û
Identical group No.348281 (3 seq.)
>A171002008
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
1404657
1404584
-
Cys
GCA
-
¡û
>WENV181406619
OGCG01000664
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
19659
19732
+
Cys
GCA
[ENA]
¢þ
>W1911654365
QEFD01000188
Thermoproteota
Acidianus hospitalis [QEFD]
5255
5328
+
Cys
GCA
[ENA]
¡û
Identical group No.391906 (1 seq.)
>A17A001491
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
626713
626606
-
Cys
GCA
-
¡û
Identical group No.391928 (1 seq.)
>A179000646
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
626713
626606
-
Cys
GCA
-
¡û
Identical group No.399305 (1 seq.)
>A17A001696
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
603213
603121
-
Cys
GCA
-
¡û
Identical group No.402173 (1 seq.)
>At0568
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
420870
421000
+
Cys
GCA
[Ensembl]
¡û
Identical group No.417218 (1 seq.)
>At0124
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
77698
77597
-
Cys
GCA
[Ensembl]
¡û
Identical group No.446347 (2 seq.)
>A17A000895
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
1421090
1421196
+
Cys
GCA
-
¡û
>A179000374
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
1421091
1421195
+
Cys
GCA
-
¡û
Identical group No.526250 (2 seq.)
>A17A000476
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1996014
1995914
-
Cys
GCA
-
¡û
>A179000181
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1996014
1995914
-
Cys
GCA
-
¡û
Identical group No.563658 (2 seq.)
>A178000208
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
503215
503120
-
Cys
GCA
-
¡û
>A177000021
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
503215
503123
-
Cys
GCA
-
¡û
Identical group No.720706 (1 seq.)
>A17A000610
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
750514
750409
-
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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