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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Anticodon = GTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77492 (2 seq.)
>ENV08000800
ABMJ01037862
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
111
25
-
Tyr
GTA
[ENA]
¡û
>SRA1000855
SRR001047.297182
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
111
25
-
Tyr
GTA
[SRA]
Identical group No.77493 (2 seq.)
>ENV08000812
ABMJ01048387
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
13
100
+
Tyr
GTA
[ENA]
¡û
>SRA1000856
SRR001047.297981
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
13
100
+
Tyr
GTA
[SRA]
Identical group No.102765 (2 seq.)
>ENV08000802
ABMJ01039041
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
102
17
-
Tyr
GTA
[ENA]
¡û
>SRA1000831
SRR001047.198088
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
102
17
-
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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