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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CCA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372673 (1 seq.)
>A179000023
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
210707
210805
+
Pseudo
CCA
-
¡û
Identical group No.456312 (1 seq.)
>A17A001018
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
356655
356825
+
Trp
CCA
-
¡û
Identical group No.485727 (1 seq.)
>A17A001008
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1333164
1332991
-
Trp
CCA
-
¡û
Identical group No.507987 (4 seq.)
>A17A001014
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
616052
615910
-
Trp
CCA
-
¡û
>A17A001504
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1479061
1478919
-
Trp
CCA
-
¡û
>A179000419
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
616052
615911
-
Trp
CCA
-
¡û
>A179000657
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1479061
1478920
-
Trp
CCA
-
¡û
Identical group No.551699 (4 seq.)
>A17A000362
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1028362
1028224
-
Trp
CCA
-
¡û
>A179000141
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1028362
1028225
-
Trp
CCA
-
¡û
>A179000340
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1084225
1084362
+
Trp
CCA
-
¡û
>A17A000794
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1084225
1084362
+
Trp
CCA
-
¡û
Identical group No.564822 (1 seq.)
>At1735
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
276477
276618
+
Trp
CCA
[Ensembl]
¡û
Identical group No.585685 (1 seq.)
>A17A000358
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
546270
546146
-
Trp
CCA
-
¡û
Identical group No.613215 (2 seq.)
>A179000741
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
586285
586425
+
Trp
CCA
-
¡û
>A179000743
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
584625
584765
+
Trp
CCA
-
¡û
Identical group No.647549 (1 seq.)
>A17A001301
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
854774
854604
-
Trp
CCA
-
¡û
Identical group No.770977 (1 seq.)
>C151068544
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
351492
351566
+
Trp
CCA
-
¡û
Identical group No.803341 (2 seq.)
>At1965
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
232278
232417
+
Trp
CCA
[Ensembl]
¡û
>At2025
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1440856
1440995
+
Trp
CCA
[Ensembl]
¡û
Identical group No.835468 (1 seq.)
>C151068561
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
517505
517435
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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