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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CCC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372665 (1 seq.)
>A173000011
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1340635
1340708
+
Gly
CCC
-
¡û
Identical group No.541351 (2 seq.)
>At1977
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1136563
1136647
+
Gly
CCC
[Ensembl]
¡û
>At2014
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
507975
508061
+
Gly
CCC
[Ensembl]
¡û
Identical group No.564835 (2 seq.)
>At1776
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1273853
1273781
-
Gly
CCC
[Ensembl]
¡û
>W1910469097
FWYE01000002
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
268846
268920
+
Gly
CCC
[ENA]
¡û
Identical group No.655450 (8 seq.)
>A171003547
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
210752
210678
-
Gly
CCC
-
¡û
>WENV181607020
OGLM01002726
[OGLM] metagenome; Human gut stool
927
853
-
Gly
CCC
[ENA]
¢þ
>WENV181655875
OGOB01002936
[OGOB] metagenome; Human gut stool
456
382
-
Gly
CCC
[ENA]
¢þ
>WENV183382871
OLYL01026134
[OLYL] human gut metagenome; feces
135
209
+
Gly
CCC
[ENA]
¢þ
>WENV183409642
OMAG01003295
[OMAG] human gut metagenome; feces
3759
3685
-
Gly
CCC
[ENA]
¢þ
>WENV183439054
OMCF01026134
[OMCF] human gut metagenome; feces
135
209
+
Gly
CCC
[ENA]
¢þ
>WENV183458444
OMDM01014536
[OMDM] human gut metagenome; feces
587
661
+
Gly
CCC
[ENA]
¢þ
>W1610011053
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
98621
98695
+
Gly
CCC
[ENA]
¡û
Identical group No.655761 (3 seq.)
>A171003709
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1635515
1635441
-
Gly
CCC
-
¡û
>WENV180620034
OCQB01023871
[OCQB] human gut metagenome; human gut
355
281
-
Gly
CCC
[ENA]
¢þ
>WENV181088536
OEBA01002169
[OEBA] human metagenome; G_DNA_Stool
10042
10116
+
Gly
CCC
[ENA]
¢þ
Identical group No.674653 (4 seq.)
>A171007739
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1172872
1172943
+
Gly
CCC
-
¡û
>A171007776
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1176325
1176396
+
Gly
CCC
-
¡û
>W141000150
AADL01002182
Unclassified
mine drainage metagenome Group III [AADL]
459
388
-
Gly
CCC
[ENA]
¡û
>WENV077158
AADL01002182
Acid Mine Drainage microbial communities from Richmond mine
459
385
-
Gly
CCC
[ENA]
Identical group No.690947 (3 seq.)
>A171006518
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1717195
1717269
+
Gly
CCC
-
¡û
>WENV180676081
OCVV011361524
[OCVV] gut metagenome; gut
1114
1188
+
Gly
CCC
[ENA]
¢þ
>WENV180676083
OCVV011361524
[OCVV] gut metagenome; gut
1114
1188
+
Gly
CCC
[ENA]
¢þ
Identical group No.697563 (4 seq.)
>A171001355
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
452216
452288
+
Gly
CCC
-
¡û
>W1610000689
ABSD01000049
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
46944
46870
-
Gly
CCC
[ENA]
¡û
>W1610000694
ABSD01000056
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
68656
68730
+
Gly
CCC
[ENA]
¡û
>W1610001699
ADFG01000013
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
28566
28640
+
Gly
CCC
[ENA]
¡û
Identical group No.713255 (1 seq.)
>A171002890
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
509061
508987
-
Gly
CCC
-
¡û
Identical group No.720689 (1 seq.)
>A171002561
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
219398
219324
-
Gly
CCC
-
¡û
Identical group No.775787 (1 seq.)
>A171005734
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1129657
1129730
+
Gly
CCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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