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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CGC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274418 (14 seq.)
>A171003518
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
953160
953236
+
Ala
CGC
-
¡û
>WENV180326424
OBKS01072935
[OBKS] human gut metagenome; human gut
517
593
+
Ala
CGC
[ENA]
¢þ
>WENV181607233
OGLM01004999
[OGLM] metagenome; Human gut stool
8366
8290
-
Ala
CGC
[ENA]
¢þ
>WENV181655798
OGOB01001387
[OGOB] metagenome; Human gut stool
956
880
-
Ala
CGC
[ENA]
¢þ
>WENV181772611
OGRD01008635
[OGRD] human gut metagenome; faeces
1539
1463
-
Ala
CGC
[ENA]
¢þ
>WENV182525675
OIWT01003651
[OIWT] human gut metagenome; faeces
12259
12335
+
Ala
CGC
[ENA]
¢þ
>WENV183045898
OLGE01035689
[OLGE] human gut metagenome; faeces
908
832
-
Ala
CGC
[ENA]
¢þ
>WENV183382640
OLYL01006756
[OLYL] human gut metagenome; feces
1356
1432
+
Ala
CGC
[ENA]
¢þ
>WENV183409754
OMAG01007152
[OMAG] human gut metagenome; feces
461
537
+
Ala
CGC
[ENA]
¢þ
>WENV183438823
OMCF01006756
[OMCF] human gut metagenome; feces
1356
1432
+
Ala
CGC
[ENA]
¢þ
>WENV183458276
OMDM01005001
[OMDM] human gut metagenome; feces
1424
1348
-
Ala
CGC
[ENA]
¢þ
>W1610011067
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
1023008
1022932
-
Ala
CGC
[ENA]
¡û
>W1610799757
LOPS01000027
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
37491
37567
+
Ala
CGC
[ENA]
¡û
>WENV082665
BAAV01030660
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
223
301
+
Ala
CGC
[ENA]
Identical group No.327472 (3 seq.)
>A171006528
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
986414
986338
-
Ala
CGC
-
¡û
>WENV180659947
OCVV010895702
[OCVV] gut metagenome; gut
1423
1499
+
Ala
CGC
[ENA]
¢þ
>WENV180659948
OCVV010895702
[OCVV] gut metagenome; gut
1423
1499
+
Ala
CGC
[ENA]
¢þ
Identical group No.338093 (4 seq.)
>A171001378
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
454065
453991
-
Ala
CGC
-
¡û
>W1610000688
ABSD01000049
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
45095
45169
+
Ala
CGC
[ENA]
¡û
>W1610000695
ABSD01000056
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
70480
70407
-
Ala
CGC
[ENA]
¡û
>W1610001700
ADFG01000013
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
30415
30341
-
Ala
CGC
[ENA]
¡û
Identical group No.361461 (1 seq.)
>A171002869
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
506055
506129
+
Ala
CGC
-
¡û
Identical group No.372629 (1 seq.)
>A171002554
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
843180
843104
-
Ala
CGC
-
¡û
Identical group No.446338 (1 seq.)
>A171005721
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
531448
531524
+
Ala
CGC
-
¡û
Identical group No.563628 (1 seq.)
>A171000319
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1337768
1337695
-
Ala
CGC
-
¡û
Identical group No.642381 (1 seq.)
>C153000870
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
411820
411748
-
Ala
CGC
-
¡û
Identical group No.655762 (6 seq.)
>A171003715
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1077912
1077840
-
Ala
CGC
-
¡û
>WENV180470037
OBYM01042584
[OBYM] human gut metagenome; faeces
546
618
+
Ala
CGC
[ENA]
¢þ
>WENV180620114
OCQB01029986
[OCQB] human gut metagenome; human gut
922
850
-
Ala
CGC
[ENA]
¢þ
>WENV180963376
ODUN01141413
[ODUN] human metagenome; G_DNA_Stool
61
133
+
Ala
CGC
[ENA]
¢þ
>WENV181035967
ODXP01000088
[ODXP] human metagenome; G_DNA_Stool
89961
89889
-
Ala
CGC
[ENA]
¢þ
>WENV181089373
OEBA01023982
[OEBA] human metagenome; G_DNA_Stool
525
597
+
Ala
CGC
[ENA]
¢þ
Identical group No.664234 (13 seq.)
>WENV181292295
OFHE01000049
[OFHE] soil metagenome; Clay
8662
8591
-
Ala
CGC
[ENA]
¢þ
>WENV181295028
OFHI01000007
[OFHI] soil metagenome; Clay
45234
45305
+
Ala
CGC
[ENA]
¢þ
>WENV181295808
OFHJ01000762
[OFHJ] soil metagenome; Clay
2812
2741
-
Ala
CGC
[ENA]
¢þ
>WENV170013401
AUZX01002810
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
271
342
+
Ala
CGC
[ENA]
¢þ
>At1986
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1556308
1556379
+
Ala
CGC
[Ensembl]
¡û
>At2054
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1569162
1569091
-
Ala
CGC
[Ensembl]
¡û
>ENV09002038
ACXJ01007511
Mine drainage metagenome Contig1
293
364
+
Ala
CGC
[ENA]
¡û
>ENV09002042
ACXJ01007766
Mine drainage metagenome Contig1
560
489
-
Ala
CGC
[ENA]
¡û
>ENV09002134
ACXJ01010306
Mine drainage metagenome Contig1
1771
1842
+
Ala
CGC
[ENA]
¡û
>ENV09002135
ACXJ01010319
Mine drainage metagenome Contig1
796
725
-
Ala
CGC
[ENA]
¡û
>ENV09002282
ACXK01000051
Thermoplasmatales archaeon A-plasma AplasmaContig10144
745
674
-
Ala
CGC
[ENA]
¡û
>ENV09002317
ACXL01000013
Thermoplasmatales archaeon E-plasma EplasmaContig2057
210009
210080
+
Ala
CGC
[ENA]
¡û
>W1610046683
BBCP01000007
Unclassified
Thermogymnomonas acidicola JCM 13583 [BBCP]
5909
5838
-
Ala
CGC
[ENA]
¡û
Identical group No.674650 (4 seq.)
>A171007745
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1711435
1711506
+
Ala
CGC
-
¡û
>A171007782
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1678840
1678911
+
Ala
CGC
-
¡û
>W141000138
AADL01001958
Unclassified
mine drainage metagenome Group III [AADL]
3707
3778
+
Ala
CGC
[ENA]
¡û
>WENV077146
AADL01001958
Acid Mine Drainage microbial communities from Richmond mine
3707
3781
+
Ala
CGC
[ENA]
Identical group No.686536 (2 seq.)
>A173000152
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
800655
800584
-
Ala
CGC
-
¡û
>A173000305
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1665687
1665615
-
Ala
CGC
-
¡û
Identical group No.721441 (2 seq.)
>At1758
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
618384
618313
-
Ala
CGC
[Ensembl]
¡û
>W1910469084
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
358520
358592
+
Ala
CGC
[ENA]
¡û
Identical group No.835890 (1 seq.)
>C153000873
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
129976
130051
+
Ala
CGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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