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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GGG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372599 (1 seq.)
>A171000314
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1364976
1364903
-
Pro
GGG
-
¡û
Identical group No.455546 (16 seq.)
>A171003535
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1446738
1446663
-
Pro
GGG
-
¡û
>A171006506
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
192535
192610
+
Pro
GGG
-
¡û
>WENV180325996
OBKS01019743
[OBKS] human gut metagenome; human gut
1512
1587
+
Pro
GGG
[ENA]
¢þ
>WENV180341915
OBLI01277091
[OBLI] pig gut metagenome; faeces
49
124
+
Pro
GGG
[ENA]
¢þ
>WENV180675621
OCVV011359021
[OCVV] gut metagenome; gut
2481
2556
+
Pro
GGG
[ENA]
¢þ
>WENV180675622
OCVV011359021
[OCVV] gut metagenome; gut
2481
2556
+
Pro
GGG
[ENA]
¢þ
>WENV181606476
OGLM01000344
[OGLM] metagenome; Human gut stool
29765
29690
-
Pro
GGG
[ENA]
¢þ
>WENV181655725
OGOB01000774
[OGOB] metagenome; Human gut stool
10231
10306
+
Pro
GGG
[ENA]
¢þ
>WENV181772546
OGRD01006395
[OGRD] human gut metagenome; faeces
2358
2433
+
Pro
GGG
[ENA]
¢þ
>WENV182524234
OIWT01000083
[OIWT] human gut metagenome; faeces
31319
31244
-
Pro
GGG
[ENA]
¢þ
>WENV183045375
OLGE01009843
[OLGE] human gut metagenome; faeces
2393
2468
+
Pro
GGG
[ENA]
¢þ
>WENV183409722
OMAG01006004
[OMAG] human gut metagenome; feces
1570
1495
-
Pro
GGG
[ENA]
¢þ
>WENV183458609
OMDM01035137
[OMDM] human gut metagenome; feces
32
107
+
Pro
GGG
[ENA]
¢þ
>WENV183517690
OMNP01007971
[OMNP] human gut metagenome; feces
180
255
+
Pro
GGG
[ENA]
¢þ
>W1610011062
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
529430
529505
+
Pro
GGG
[ENA]
¡û
>W1610799752
LOPS01000019
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
9845
9770
-
Pro
GGG
[ENA]
¡û
Identical group No.456315 (1 seq.)
>A173000156
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1659558
1659633
+
Pro
GGG
-
¡û
Identical group No.488113 (4 seq.)
>A171007751
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1427329
1427255
-
Pro
GGG
-
¡û
>A171007788
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1421507
1421433
-
Pro
GGG
-
¡û
>W141000130
AADL01001817
Unclassified
mine drainage metagenome Group III [AADL]
514
440
-
Pseudo
GGG
[ENA]
¡û
>WENV077138
AADL01001817
Acid Mine Drainage microbial communities from Richmond mine
514
437
-
Pro
GGG
[ENA]
Identical group No.526074 (5 seq.)
>A171001365
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1419330
1419403
+
Pro
GGG
-
¡û
>A171002885
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
923712
923639
-
Pro
GGG
-
¡û
>W1610000651
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
275142
275217
+
Pro
GGG
[ENA]
¡û
>W1610000664
ABSD01000032
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
3557
3482
-
Pro
GGG
[ENA]
¡û
>W1610001693
ADFG01000009
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
19556
19631
+
Pro
GGG
[ENA]
¡û
Identical group No.541354 (3 seq.)
>At1993
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
459164
459092
-
Pro
GGG
[Ensembl]
¡û
>At2022
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1188104
1188176
+
Pro
GGG
[Ensembl]
¡û
>W1911681164
QJSM01000018
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
95258
95330
+
Pro
GGG
[ENA]
¡û
Identical group No.563644 (1 seq.)
>A171002548
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1268739
1268666
-
Pro
GGG
-
¡û
Identical group No.564823 (1 seq.)
>At1736
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
363311
363383
+
Pro
GGG
[Ensembl]
¡û
Identical group No.647533 (1 seq.)
>A171005715
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
50202
50276
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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