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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GTC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372603 (1 seq.)
>A171000327
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
74960
74884
-
Asp
GTC
-
¡û
Identical group No.445937 (1 seq.)
>C151068559
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
749646
749572
-
Asp
GTC
-
¡û
Identical group No.456287 (7 seq.)
>A171003713
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1317854
1317779
-
Asp
GTC
-
¡û
>WENV181036269
ODXP01000485
[ODXP] human metagenome; G_DNA_Stool
34393
34468
+
Asp
GTC
[ENA]
¢þ
>WENV181088480
OEBA01001823
[OEBA] human metagenome; G_DNA_Stool
3940
4015
+
Asp
GTC
[ENA]
¢þ
>WENV182535785
OIXH01000001
[OIXH] human gut metagenome; faeces
152096
152021
-
Asp
GTC
[ENA]
¢þ
>WENV183038205
OLGB01000205
[OLGB] human gut metagenome; faeces
51977
51902
-
Asp
GTC
[ENA]
¢þ
>WENV183040430
OLGD01000006
[OLGD] human gut metagenome; faeces
152096
152021
-
Asp
GTC
[ENA]
¢þ
>W1610082852
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
153988
154063
+
Asp
GTC
[ENA]
¡û
Identical group No.488106 (10 seq.)
>A171003628
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1684877
1684950
+
Asp
GTC
-
¡û
>A171006616
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
635108
635181
+
Asp
GTC
-
¡û
>W141000071
AADL01001490
Unclassified
mine drainage metagenome Group III [AADL]
3824
3749
-
Asp
GTC
[ENA]
¡û
>W141000072
AADL01001491
Unclassified
mine drainage metagenome Group III [AADL]
211
137
-
Asp
GTC
[ENA]
¡û
>W141000147
AADL01002079
Unclassified
mine drainage metagenome Group III [AADL]
1141
1215
+
Asp
GTC
[ENA]
¡û
>ENV09002309
ACXL01000008
Thermoplasmatales archaeon E-plasma EplasmaContig2057
156425
156350
-
Asp
GTC
[ENA]
¡û
>W1610000076
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
340759
340832
+
Asp
GTC
[ENA]
¡û
>WENV077079
AADL01001490
Acid Mine Drainage microbial communities from Richmond mine
3824
3747
-
Asp
GTC
[ENA]
>WENV077080
AADL01001491
Acid Mine Drainage microbial communities from Richmond mine
211
134
-
Asp
GTC
[ENA]
>WENV077155
AADL01002079
Acid Mine Drainage microbial communities from Richmond mine
1141
1218
+
Asp
GTC
[ENA]
Identical group No.488114 (5 seq.)
>A171007742
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1218495
1218567
+
Asp
GTC
-
¡û
>A171007779
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1221318
1221390
+
Asp
GTC
-
¡û
>W141000139
AADL01001966
Unclassified
mine drainage metagenome Group III [AADL]
3014
2939
-
Asp
GTC
[ENA]
¡û
>ENV09002059
ACXJ01008428
Mine drainage metagenome Contig1
600
675
+
Asp
GTC
[ENA]
¡û
>WENV077147
AADL01001966
Acid Mine Drainage microbial communities from Richmond mine
3014
2939
-
Asp
GTC
[ENA]
Identical group No.541360 (3 seq.)
>At1972
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
845602
845674
+
Asp
GTC
[Ensembl]
¡û
>At2040
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
708186
708114
-
Asp
GTC
[Ensembl]
¡û
>W1911681168
QJSM01000020
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
188501
188574
+
Asp
GTC
[ENA]
¡û
Identical group No.551694 (2 seq.)
>A178000135
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
454149
454277
+
Asp
GTC
-
¡û
>A178000306
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
504183
504061
-
Asp
GTC
-
¡û
Identical group No.563668 (2 seq.)
>A173000082
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1086292
1086367
+
Asp
GTC
-
¡û
>A173000298
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
411667
411592
-
Asp
GTC
-
¡û
Identical group No.564826 (2 seq.)
>At1745
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
930670
930742
+
Asp
GTC
[Ensembl]
¡û
>W1910469094
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
46581
46507
-
Asp
GTC
[ENA]
¡û
Identical group No.647552 (1 seq.)
>A173000246
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
816845
816920
+
Asp
GTC
-
¡û
Identical group No.734348 (1 seq.)
>A17A000365
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1181314
1181192
-
Asp
GTC
-
¡û
Identical group No.771936 (1 seq.)
>CL171800016
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
738363
738498
+
Asp
GTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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