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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TCC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372666 (1 seq.)
>A173000012
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1447172
1447099
-
Gly
TCC
-
¡û
Identical group No.455549 (12 seq.)
>A171003520
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1180781
1180856
+
Gly
TCC
-
¡û
>WENV180326405
OBKS01069975
[OBKS] human gut metagenome; human gut
260
335
+
Gly
TCC
[ENA]
¢þ
>WENV180340749
OBLI01042356
[OBLI] pig gut metagenome; faeces
88
163
+
Gly
TCC
[ENA]
¢þ
>WENV181606848
OGLM01001427
[OGLM] metagenome; Human gut stool
13487
13412
-
Gly
TCC
[ENA]
¢þ
>WENV181655700
OGOB01000601
[OGOB] metagenome; Human gut stool
2836
2761
-
Gly
TCC
[ENA]
¢þ
>WENV182525520
OIWT01002755
[OIWT] human gut metagenome; faeces
3440
3365
-
Gly
TCC
[ENA]
¢þ
>WENV183045552
OLGE01014602
[OLGE] human gut metagenome; faeces
2216
2291
+
Gly
TCC
[ENA]
¢þ
>WENV183382803
OLYL01017484
[OLYL] human gut metagenome; feces
463
538
+
Gly
TCC
[ENA]
¢þ
>WENV183438986
OMCF01017484
[OMCF] human gut metagenome; feces
463
538
+
Gly
TCC
[ENA]
¢þ
>WENV183458301
OMDM01005748
[OMDM] human gut metagenome; feces
622
697
+
Gly
TCC
[ENA]
¢þ
>WENV183517891
OMNP01023994
[OMNP] human gut metagenome; feces
920
845
-
Gly
TCC
[ENA]
¢þ
>W1610011069
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
795387
795312
-
Gly
TCC
[ENA]
¡û
Identical group No.456281 (10 seq.)
>A171003697
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
527137
527210
+
Gly
TCC
-
¡û
>WENV180470134
OBYM01069113
[OBYM] human gut metagenome; faeces
376
303
-
Gly
TCC
[ENA]
¢þ
>WENV180963670
ODUN01331750
[ODUN] human metagenome; G_DNA_Stool
11
84
+
Gly
TCC
[ENA]
¢þ
>WENV181035902
ODXP01000050
[ODXP] human metagenome; G_DNA_Stool
100651
100724
+
Gly
TCC
[ENA]
¢þ
>WENV181088869
OEBA01006442
[OEBA] human metagenome; G_DNA_Stool
2817
2890
+
Gly
TCC
[ENA]
¢þ
>WENV181702355
OGPH01060185
[OGPH] human gut metagenome; faeces
276
203
-
Gly
TCC
[ENA]
¢þ
>WENV182193849
OHPB01030582
[OHPB] human gut metagenome; feces
592
519
-
Gly
TCC
[ENA]
¢þ
>WENV182535846
OIXH01000020
[OIXH] human gut metagenome; faeces
90878
90805
-
Gly
TCC
[ENA]
¢þ
>WENV183039638
OLGB01011082
[OLGB] human gut metagenome; faeces
2857
2930
+
Gly
TCC
[ENA]
¢þ
>WENV183040946
OLGD01000242
[OLGD] human gut metagenome; faeces
6094
6021
-
Gly
TCC
[ENA]
¢þ
Identical group No.488107 (7 seq.)
>A171003626
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1057550
1057622
+
Gly
TCC
-
¡û
>A171006614
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
88186
88258
+
Gly
TCC
-
¡û
>W141000091
AADL01001526
Unclassified
mine drainage metagenome Group III [AADL]
31058
31131
+
Gly
TCC
[ENA]
¡û
>W141000119
AADL01001693
Unclassified
mine drainage metagenome Group III [AADL]
1867
1795
-
Gly
TCC
[ENA]
¡û
>W1610000070
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
184616
184688
+
Gly
TCC
[ENA]
¡û
>WENV077099
AADL01001526
Acid Mine Drainage microbial communities from Richmond mine
31058
31133
+
Gly
TCC
[ENA]
>WENV077127
AADL01001693
Acid Mine Drainage microbial communities from Richmond mine
1867
1792
-
Gly
TCC
[ENA]
Identical group No.514623 (3 seq.)
>A171002531
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1057644
1057717
+
Gly
TCC
-
¡û
>WENV180666027
OCVV011200478
[OCVV] gut metagenome; gut
454
527
+
Gly
TCC
[ENA]
¢þ
>WENV180666028
OCVV011200478
[OCVV] gut metagenome; gut
454
527
+
Gly
TCC
[ENA]
¢þ
Identical group No.526072 (5 seq.)
>A171001362
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1330863
1330936
+
Gly
TCC
-
¡û
>A171002873
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1076676
1076749
+
Gly
TCC
-
¡û
>W1610000648
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
165196
165271
+
Gly
TCC
[ENA]
¡û
>W1610000661
ABSD01000032
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
92024
91949
-
Gly
TCC
[ENA]
¡û
>W1610001687
ADFG01000004
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
37253
37328
+
Gly
TCC
[ENA]
¡û
Identical group No.541365 (2 seq.)
>At1991
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
352925
352853
-
Gly
TCC
[Ensembl]
¡û
>At2051
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1351095
1351023
-
Gly
TCC
[Ensembl]
¡û
Identical group No.564824 (2 seq.)
>At1737
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
385169
385241
+
Gly
TCC
[Ensembl]
¡û
>W1930008464
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
579911
579839
-
Gly
TCC
[ENA]
¡û
Identical group No.594128 (1 seq.)
>A171006527
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1351114
1351041
-
Gly
TCC
-
¡û
Identical group No.647535 (1 seq.)
>A171005724
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
779910
779983
+
Gly
TCC
-
¡û
Identical group No.833432 (1 seq.)
>C151068551
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
1046636
1046566
-
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK