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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = TCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282505 (15 seq.)
>W141401184
JDSS02000053
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
137631
137707
+
Arg
TCT
[ENA]
¡û
>W141401201
JDST02000049
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
22847
22923
+
Arg
TCT
[ENA]
¡û
>W141402445
JDVG02000387
Betaproteobacteria
Candidatus Accumulibacter phosphatis sp. BA-91 [JDVG]
11361
11437
+
Arg
TCT
[ENA]
¡û
>W141426775
JEMX01000011
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
54390
54466
+
Arg
TCT
[ENA]
¡û
>W141426845
JEMY01000067
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
29248
29172
-
Arg
TCT
[ENA]
¡û
>W141451277
JFAW01000021
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
30711
30787
+
Arg
TCT
[ENA]
¡û
>W141451295
JFAX01000003
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
41529
41453
-
Arg
TCT
[ENA]
¡û
>C10101137
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2667524
2667448
-
Arg
TCT
[Ensembl]
¡û
>W1511592944
LBIU01000181
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
5395
5471
+
Arg
TCT
[ENA]
¡û
>W1511592967
LBIV01000043
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
16209
16133
-
Arg
TCT
[ENA]
¡û
>W1610506417
FLQX01000094
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
258
334
+
Arg
TCT
[ENA]
¡û
>WENV079755
AATN01000260
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2973
2895
-
Arg
TCT
[ENA]
>WENV079982
AATO01000124
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
13582
13660
+
Arg
TCT
[ENA]
>WENV080035
AATO01001608
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
264
342
+
Arg
TCT
[ENA]
>W1710498920
FLQX01000094
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
258
334
+
Arg
TCT
[ENA]
¡û
Identical group No.360508 (1 seq.)
>WENV079795
AATN01000971
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3323
3399
+
Arg
TCT
[ENA]
Identical group No.360519 (1 seq.)
>WENV079900
AATN01007419
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
160
84
-
Arg
TCT
[ENA]
Identical group No.360521 (2 seq.)
>WENV079905
AATN01007539
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
287
365
+
Arg
TCT
[ENA]
>WENV079906
AATN01007539
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
758
836
+
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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