tRNA genes clustered and arranged according to each identical group

Wastewater EBPR microbial communities from Bioreactor (USA sludge)

Anticodon = TGA

HIT: 4 Group(s).

Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.64152 (1 seq.)
>WENV080051	AATO01002150	Wastewater EBPR microbial communities from Bioreactor (USA sludge)		1306	1397	+	Ser	TGA	[ENA]
Identical group No.87190 (111 seq.)
>W1710877153	LMPW01000001	Bacteroidota	Flavobacterium sp. Leaf359 [LMPW]	494362	494277	-	Ser	TGA	[ENA]	○
>W1710990999	LPXI01000036	Bacteroidota	Myroides marinus [LPXI]	54562	54649	+	Ser	TGA	[ENA]	○
>W1710991023	LPXI01000046	Bacteroidota	Myroides marinus [LPXI]	685	600	-	Ser	TGA	[ENA]	○
>W1710991024	LPXI01000049	Bacteroidota	Myroides marinus [LPXI]	342	257	-	Ser	TGA	[ENA]	○
>W1711005723	LQNU01000035	Bacteroidota	Myroides marinus [LQNU]	6697	6610	-	Ser	TGA	[ENA]	○
>W1711005789	LQNU01000072	Bacteroidota	Myroides marinus [LQNU]	8638	8553	-	Ser	TGA	[ENA]	○
>W1711005790	LQNU01000073	Bacteroidota	Myroides marinus [LQNU]	18325	18238	-	Ser	TGA	[ENA]	○
>W1711047401	LROZ01000002	Bacteroidota	Myroides odoratus [LROZ]	111083	111170	+	Ser	TGA	[ENA]	○
>W1711047403	LROZ01000003	Bacteroidota	Myroides odoratus [LROZ]	250958	251045	+	Ser	TGA	[ENA]	○
>W1711385060	MEDR01000035	Bacteroidota	Chryseobacterium sp. SCN 40-13 [MEDR]	125411	125324	-	Ser	TGA	[ENA]	○
>W1711487689	MKGI01000004	Bacteroidota	Cloacibacterium normanense [MKGI]	34229	34142	-	Ser	TGA	[ENA]	○
>W1711503312	MKTM01000020	Bacteroidota	Flavobacterium sp. 40-81 [MKTM]	111870	111957	+	Ser	TGA	[ENA]	○
>W1711503313	MKTM01000021	Bacteroidota	Flavobacterium sp. 40-81 [MKTM]	172256	172169	-	Ser	TGA	[ENA]	○
>W1711505177	MKVG01000006	Bacteroidota	Flavobacterium sp. 38-13 [MKVG]	81637	81724	+	Ser	TGA	[ENA]	○
>W1711584448	MNYM01000021	Bacteroidota	Flavobacteriaceae bacterium CG2_30_31_66 [MNYM]	9658	9571	-	Ser	TGA	[ENA]	○
>W131176848	ARKJ01000017	Bacteroidota	Flavobacterium rivuli DSM 21788 [ARKJ]	33128	33041	-	Ser	TGA	[ENA]	○
>W131176883	ARKJ01000026	Bacteroidota	Flavobacterium rivuli DSM 21788 [ARKJ]	371496	371409	-	Ser	TGA	[ENA]	○
>W131224676	AUCZ01000004	Bacteroidota	Flavobacterium suncheonense DSM 17707 [AUCZ]	332054	332141	+	Ser	TGA	[ENA]	○
>W131225247	AUDK01000006	Bacteroidota	Flavobacterium daejeonense DSM 17708 [AUDK]	20737	20824	+	Ser	TGA	[ENA]	○
>W131225252	AUDK01000010	Bacteroidota	Flavobacterium daejeonense DSM 17708 [AUDK]	82043	81956	-	Ser	TGA	[ENA]	○
>W131225329	AUDM01000004	Bacteroidota	Flavobacterium filum DSM 17961 [AUDM]	205231	205144	-	Ser	TGA	[ENA]	○
>W131229172	AUGP01000016	Bacteroidota	Flavobacterium subsaxonicum DSM 21790 [AUGP]	188381	188468	+	Ser	TGA	[ENA]	○
>C171063337	CP017479	Bacteroidota	Flavobacterium gilvum EM1308 [CP017479]	2646664	2646579	-	Ser	TGA	-	○
>W141008086	AGZJ01000027	Bacteroidota	Myroides odoratus CIP 103059 [AGZJ]	74937	75022	+	Ser	TGA	[ENA]	○
>W141008114	AGZJ01000052	Bacteroidota	Myroides odoratus CIP 103059 [AGZJ]	13550	13637	+	Ser	TGA	[ENA]	○
>W141008121	AGZJ01000074	Bacteroidota	Myroides odoratus CIP 103059 [AGZJ]	69277	69364	+	Ser	TGA	[ENA]	○
>WENV180695030	OCZS012942169	[OCZS] soil metagenome; soil		172	87	-	Ser	TGA	[ENA]	◯
>W141093455	AVBI01000019	Bacteroidota	Flavobacterium cauense R2A-7 [AVBI]	330620	330705	+	Ser	TGA	[ENA]	○
>W141094567	AVCS01000003	Bacteroidota	Flavobacterium enshiense DK69 [AVCS]	68683	68598	-	Ser	TGA	[ENA]	○
>W141096682	AVFO01000030	Bacteroidota	Flavobacterium saliperosum S13 [AVFO]	23215	23128	-	Ser	TGA	[ENA]	○
>W141097124	AVGG01000007	Bacteroidota	Flavobacterium limnosediminis JC2902 [AVGG]	146991	147078	+	Ser	TGA	[ENA]	○
>W141097125	AVGG01000007	Bacteroidota	Flavobacterium limnosediminis JC2902 [AVGG]	147183	147270	+	Ser	TGA	[ENA]	○
>WENV181834703	OGVG01000046	[OGVG] freshwater metagenome; freshwater		146	61	-	Ser	TGA	[ENA]	◯
>WENV181836559	OGVJ01012298	[OGVJ] freshwater metagenome; freshwater		677	590	-	Ser	TGA	[ENA]	◯
>WENV181838463	OGVN01000556	[OGVN] freshwater metagenome; freshwater		552	467	-	Ser	TGA	[ENA]	◯
>WENV183729754	PJTR01000048	[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment		107377	107290	-	Ser	TGA	[ENA]	◯
>WENV183729759	PJTR01000057	[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment		106355	106442	+	Ser	TGA	[ENA]	◯
>WENV183731150	PJTS01013365	[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment		699	786	+	Ser	TGA	[ENA]	◯
>WENV170642948	JFJP01047289	[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink		5842	5755	-	Ser	TGA	[ENA]	◯
>WENV170680850	LFEF01028262	[LFEF] freshwater metagenome; waterbloom		3030	3115	+	Ser	TGA	[ENA]	◯
>WENV170720373	LSQX01150974	[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition		339	252	-	Ser	TGA	[ENA]	◯
>C181168498	CP028811	Bacteroidota	Flavobacterium magnum HYN0048 [CP028811]	2813798	2813883	+	Ser	TGA	-	○
>C181175906	CP029186	Bacteroidota	Flavobacterium album HYN0059 [CP029186]	2676940	2676855	-	Ser	TGA	-	○
>C181175951	CP029187	Bacteroidota	Flavobacterium pallidum HYN0049 [CP029187]	2603996	2603911	-	Ser	TGA	-	○
>C191120388	CP034157	Bacteroidota	Cloacibacterium normanense NRS-1 [CP034157]	722300	722385	+	Ser	TGA	-	○
>C191132738	CP034930	Bacteroidota	Apibacter raozihei HY041 [CP034930]	258243	258328	+	Ser	TGA	-	○
>C191155257	CP037933	Bacteroidota	Flavobacterium nackdongense GS13 [CP037933]	32008	31921	-	Ser	TGA	-	○
>C191161900	CP038810	Bacteroidota	Flavobacterium sangjuense GS03 [CP038810]	2697569	2697654	+	Ser	TGA	-	○
>W141727227	JNCP01000139	Bacteroidota	Flavobacterium gilvum EM1308 [JNCP]	7364	7449	+	Ser	TGA	[ENA]	○
>W1910796592	MSCL01000001	Bacteroidota	Polaribacter gangjinensis KCTC 22729 [MSCL]	1354654	1354569	-	Ser	TGA	[ENA]	○
>W1910808945	MUGT01000088	Bacteroidota	Flavobacterium branchiophilum ATCC 35035 [MUGT]	16337	16252	-	Ser	TGA	[ENA]	○
>W1911139436	NOXX01000165	Bacteroidota	Flavobacterium aurantiibacter TH167 [NOXX]	16606	16691	+	Ser	TGA	[ENA]	○
>W1911243250	NSGJ01000018	Bacteroidota	Myroides sp. N17-2 [NSGJ]	20814	20729	-	Ser	TGA	[ENA]	○
>W1911243268	NSGJ01000038	Bacteroidota	Myroides sp. N17-2 [NSGJ]	34487	34572	+	Ser	TGA	[ENA]	○
>W1911564292	PCMW01000080	Bacteroidota	Flavobacterium branchiophilum ATCC 35036 [PCMW]	22540	22455	-	Ser	TGA	[ENA]	○
>W1810173572	PJND01000008	Bacteroidota	Flavobacterium lindanitolerans IP-10 [PJND]	81628	81713	+	Ser	TGA	[ENA]	○
>W1810260920	PQNY01000005	Bacteroidota	Flavobacterium croceum DSM 17960 [PQNY]	79670	79757	+	Ser	TGA	[ENA]	○
>W1810265870	PQVG01000008	Bacteroidota	Flavobacterium alvei HR-AY [PQVG]	155855	155768	-	Ser	TGA	[ENA]	○
>W1810282726	PSZM01000001	Bacteroidota	Apibacter adventoris wkB301 [PSZM]	165123	165208	+	Ser	TGA	[ENA]	○
>W1810282790	PSZN01000023	Bacteroidota	Apibacter adventoris wkB180 [PSZN]	5081	5166	+	Ser	TGA	[ENA]	○
>W1810304688	PTPZ01000001	Bacteroidota	Cloacibacterium normanense IMET F [PTPZ]	393491	393576	+	Ser	TGA	[ENA]	○
>W1810695881	QLSV01000005	Bacteroidota	Flavobacterium lacus CGMCC 1.12504 [QLSV]	248613	248698	+	Ser	TGA	[ENA]	○
>W1810696089	QLSZ01000003	Bacteroidota	Flavobacterium aciduliphilum DSM 25663 [QLSZ]	178969	178884	-	Ser	TGA	[ENA]	○
>W1810758146	QPIE01000002	Bacteroidota	Chryseobacterium lacus YLOS41 [QPIE]	19444	19531	+	Ser	TGA	[ENA]	○
>W1511481076	JWJO01000025	Bacteroidota	Myroides marinus L41 [JWJO]	6688	6601	-	Ser	TGA	[ENA]	○
>W1511481084	JWJO01000039	Bacteroidota	Myroides marinus L41 [JWJO]	8629	8544	-	Ser	TGA	[ENA]	○
>W1511481085	JWJO01000042	Bacteroidota	Myroides marinus L41 [JWJO]	18316	18229	-	Ser	TGA	[ENA]	○
>C121017024	FQ859183	Bacteroidota	Flavobacterium branchiophilum FL-15 [FQ859183]	2127239	2127152	-	Ser	TGA	[Ensembl]	○
>W121034456	AHKQ01000003	Bacteroidota	Myroides odoratus DSM 2801 [AHKQ]	265366	265281	-	Ser	TGA	[ENA]	○
>W121034516	AHKQ01000028	Bacteroidota	Myroides odoratus DSM 2801 [AHKQ]	180479	180566	+	Ser	TGA	[ENA]	○
>W121034521	AHKQ01000031	Bacteroidota	Myroides odoratus DSM 2801 [AHKQ]	183282	183195	-	Ser	TGA	[ENA]	○
>W1610534923	JRLG01000011	Bacteroidota	Flavobacterium daejeonense [JRLG]	55831	55916	+	Ser	TGA	[ENA]	○
>W1610534924	JRLG01000011	Bacteroidota	Flavobacterium daejeonense [JRLG]	319055	319140	+	Ser	TGA	[ENA]	○
>W1610534983	JRLU01000004	Bacteroidota	Flavobacterium cauense R2A-7 [JRLU]	387025	386940	-	Ser	TGA	[ENA]	○
>W1610535036	JRLW01000001	Bacteroidota	Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]	332739	332826	+	Ser	TGA	[ENA]	○
>W1610535076	JRLX01000001	Bacteroidota	Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]	133248	133161	-	Ser	TGA	[ENA]	○
>W1610535103	JRLX01000024	Bacteroidota	Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]	32863	32776	-	Ser	TGA	[ENA]	○
>W1610535116	JRLY01000001	Bacteroidota	Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]	148030	148117	+	Ser	TGA	[ENA]	○
>W1610535161	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288269	288356	+	Ser	TGA	[ENA]	○
>W1610535162	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288463	288550	+	Ser	TGA	[ENA]	○
>W1610535163	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288657	288742	+	Ser	TGA	[ENA]	○
>W1610627144	LIDG01000227	Bacteroidota	Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]	758	673	-	Ser	TGA	[ENA]	○
>W1610739499	LMPW01000001	Bacteroidota	Flavobacterium sp. Leaf359 [LMPW]	494362	494277	-	Ser	TGA	[ENA]	○
>W1610845671	LPXI01000036	Bacteroidota	Myroides marinus [LPXI]	54562	54649	+	Ser	TGA	[ENA]	○
>W1610845695	LPXI01000046	Bacteroidota	Myroides marinus [LPXI]	685	600	-	Ser	TGA	[ENA]	○
>W1610845696	LPXI01000049	Bacteroidota	Myroides marinus [LPXI]	342	257	-	Ser	TGA	[ENA]	○
>W1610856373	LQNU01000035	Bacteroidota	Myroides marinus [LQNU]	6697	6610	-	Ser	TGA	[ENA]	○
>W1610856439	LQNU01000072	Bacteroidota	Myroides marinus [LQNU]	8638	8553	-	Ser	TGA	[ENA]	○
>W1610856440	LQNU01000073	Bacteroidota	Myroides marinus [LQNU]	18325	18238	-	Ser	TGA	[ENA]	○
>W1610888530	LROZ01000002	Bacteroidota	Myroides odoratus [LROZ]	111083	111170	+	Ser	TGA	[ENA]	○
>W1610888532	LROZ01000003	Bacteroidota	Myroides odoratus [LROZ]	250958	251045	+	Ser	TGA	[ENA]	○
>WENV080171	AATO01010939	Wastewater EBPR microbial communities from Bioreactor (USA sludge)		256	167	-	Ser	TGA	[ENA]
>W1710505780	FMTY01000002	Bacteroidota	Flavobacterium saliperosum [FMTY]	358010	357923	-	Ser	TGA	[ENA]	○
>W1710519767	FNEZ01000002	Bacteroidota	Flavobacterium noncentrifugens [FNEZ]	657198	657111	-	Ser	TGA	[ENA]	○
>W1710524999	FNJE01000011	Bacteroidota	Cloacibacterium normanense [FNJE]	15783	15870	+	Ser	TGA	[ENA]	○
>W1710541895	FNYS01000005	Bacteroidota	Myroides marinus [FNYS]	57839	57924	+	Ser	TGA	[ENA]	○
>W1710541897	FNYS01000006	Bacteroidota	Myroides marinus [FNYS]	100726	100813	+	Ser	TGA	[ENA]	○
>W1710541912	FNYS01000020	Bacteroidota	Myroides marinus [FNYS]	86	1	-	Ser	TGA	[ENA]	○
>W1710584576	FQVQ01000014	Bacteroidota	Flavobacterium fontis [FQVQ]	90443	90358	-	Ser	TGA	[ENA]	○
>W1710588375	FQZH01000001	Bacteroidota	Flavobacterium haoranii [FQZH]	330242	330155	-	Ser	TGA	[ENA]	○
>W1710637159	JRLG01000011	Bacteroidota	Flavobacterium daejeonense [JRLG]	55831	55916	+	Ser	TGA	[ENA]	○
>W1710637160	JRLG01000011	Bacteroidota	Flavobacterium daejeonense [JRLG]	319055	319140	+	Ser	TGA	[ENA]	○
>W1710637219	JRLU01000004	Bacteroidota	Flavobacterium cauense R2A-7 [JRLU]	387025	386940	-	Ser	TGA	[ENA]	○
>W1710637272	JRLW01000001	Bacteroidota	Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]	332739	332826	+	Ser	TGA	[ENA]	○
>W1710637312	JRLX01000001	Bacteroidota	Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]	133248	133161	-	Ser	TGA	[ENA]	○
>W1710637339	JRLX01000024	Bacteroidota	Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]	32863	32776	-	Ser	TGA	[ENA]	○
>W1710637352	JRLY01000001	Bacteroidota	Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]	148030	148117	+	Ser	TGA	[ENA]	○
>W1710637397	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288269	288356	+	Ser	TGA	[ENA]	○
>W1710637398	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288463	288550	+	Ser	TGA	[ENA]	○
>W1710637399	JRLZ01000003	Bacteroidota	Flavobacterium enshiense DK69 [JRLZ]	288657	288742	+	Ser	TGA	[ENA]	○
>W1710758271	LIDG01000227	Bacteroidota	Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]	758	673	-	Ser	TGA	[ENA]	○
Identical group No.89749 (2 seq.)
>WENV170010290	APMI01012761	[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater		482	395	-	Ser	TGA	[ENA]	◯
>WENV080063	AATO01002909	Wastewater EBPR microbial communities from Bioreactor (USA sludge)		543	632	+	Ser	TGA	[ENA]
Identical group No.91814 (26 seq.)
>W131066648	ANOY01001294	Betaproteobacteria	Pseudacidovorax intermedius NH-1 [ANOY]	4841	4928	+	Ser	TGA	[ENA]	○
>W131174775	ARIS01000075	Betaproteobacteria	Thiomonas sp. FB-6 [ARIS]	142028	141941	-	Ser	TGA	[ENA]	○
>W131214626	ATUI01000019	Betaproteobacteria	Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]	45692	45779	+	Ser	TGA	[ENA]	○
>WENV180343800	OBLK01093703	[OBLK] soil metagenome; Clay		376	289	-	Ser	TGA	[ENA]	◯
>WENV180693748	OCZS011533572	[OCZS] soil metagenome; soil		229	143	-	Ser	TGA	[ENA]	◯
>WENV181187923	OEOE01002810	[OEOE] activated sludge metagenome; Activated Sludge		1321	1234	-	Ser	TGA	[ENA]	◯
>WENV181311164	OFJB01000094	[OFJB] sludge metagenome; sludge		37262	37175	-	Ser	TGA	[ENA]	◯
>WENV181401684	OFTX01002651	[OFTX] sludge metagenome; sludge		2171	2258	+	Ser	TGA	[ENA]	◯
>WENV170651451	JRYF01018469	[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated		1230	1317	+	Ser	TGA	[ENA]	◯
>WENV170961808	MLJW01001618	[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for		2942	2855	-	Ser	TGA	[ENA]	◯
>W1910175579	BJCL01000001	Betaproteobacteria	Rubrivivax pictus W35 [BJCL]	807716	807803	+	Ser	TGA	[ENA]	○
>W1810666652	QJOU01000017	Betaproteobacteria	Piscinibacter caeni MQ-18 [QJOU]	87422	87335	-	Ser	TGA	[ENA]	○
>W1810763097	QQAV01000003	Betaproteobacteria	Pseudacidovorax intermedius DSM 21352 [QQAV]	18493	18406	-	Ser	TGA	[ENA]	○
>W1510021338	BBYR01000002	Betaproteobacteria	Piscinibacter sakaiensis 201-F6 [BBYR]	72876	72789	-	Ser	TGA	[ENA]	○
>C10101140	CP001715	Betaproteobacteria	Candidatus Accumulibacter regalis [CP001715]	1024187	1024100	-	Ser	TGA	[Ensembl]	○
>W11150930	AEWG01000119	Betaproteobacteria	Rubrivivax benzoatilyticus JA2 [AEWG]	5400	5487	+	Ser	TGA	[ENA]	○
>C121001128	AP012320	Betaproteobacteria	Rubrivivax gelatinosus IL144 [AP012320]	1903399	1903312	-	Ser	TGA	[Ensembl]	○
>W121036367	AHLZ01000003	Betaproteobacteria	Burkholderiales bacterium JOSHI_001 [AHLZ]	576717	576630	-	Ser	TGA	[ENA]	○
>W121060106	AJFF01000174	Betaproteobacteria	Rubrivivax gelatinosus CBS [AJFF]	7083	7170	+	Ser	TGA	[ENA]	○
>W121060107	AJFF01000174	Betaproteobacteria	Rubrivivax gelatinosus CBS [AJFF]	1004	917	-	Ser	TGA	[ENA]	○
>W1610074340	BCWP01000002	Betaproteobacteria	Curvibacter delicatus NBRC 14919 [BCWP]	42506	42593	+	Ser	TGA	[ENA]	○
>W1610591920	LDSL01000004	Betaproteobacteria	Pseudacidovorax intermedius [LDSL]	46461	46548	+	Ser	TGA	[ENA]	○
>WENV079986	AATO01000138	Wastewater EBPR microbial communities from Bioreactor (USA sludge)		259	346	+	Ser	TGA	[ENA]
>WENV080027	AATO01001055	Wastewater EBPR microbial communities from Bioreactor (USA sludge)		923	836	-	Ser	TGA	[ENA]
>W1710071458	BCWP01000002	Betaproteobacteria	Curvibacter delicatus NBRC 14919 [BCWP]	42506	42593	+	Ser	TGA	[ENA]	○
>W1710711200	LDSL01000004	Betaproteobacteria	Pseudacidovorax intermedius [LDSL]	46461	46548	+	Ser	TGA	[ENA]	○