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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified archaeal dsDNA viruses
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84528 (1 seq.)
>PHG14102116
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50194
50107
-
Met
CAT
[ENA]
¡û
Identical group No.146662 (1 seq.)
>PHG14102125
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
45700
45617
-
Leu
GAG
[ENA]
¡û
Identical group No.175369 (1 seq.)
>PHG14102126
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
45613
45530
-
Leu
CAA
[ENA]
¡û
Identical group No.239575 (1 seq.)
>PHG14102115
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50271
50195
-
Lys
CTT
[ENA]
¡û
Identical group No.244371 (1 seq.)
>PHG14102131
KC292029
unclassified archaeal dsDNA viruses
Halovirus HCTV-1 Gb1 (KC292029)
28506
28432
-
Gln
TTG
[ENA]
¡û
Identical group No.250611 (1 seq.)
>PHG14102130
KC292027
unclassified archaeal dsDNA viruses
Halovirus HCTV-5 Gb1 (KC292027)
28959
28885
-
Gln
TTG
[ENA]
¡û
Identical group No.256624 (2 seq.)
>PHG0100031
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
18508
18584
+
Arg
TCT
[ENA]
¡û
>PHG0100230
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
18508
18584
+
Arg
TCT
[ENA]
¡û
Identical group No.263903 (1 seq.)
>PHG14102109
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
58168
58092
-
Arg
TCT
[ENA]
¡û
Identical group No.265233 (1 seq.)
>PHG14102129
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
42683
42609
-
Val
GAC
[ENA]
¡û
Identical group No.265234 (1 seq.)
>PHG14102128
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
42762
42688
-
Val
TAC
[ENA]
¡û
Identical group No.265236 (1 seq.)
>PHG14102122
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48085
48011
-
Ile
GAT
[ENA]
¡û
Identical group No.266321 (1 seq.)
>PHG14102002
KC117377
unclassified archaeal dsDNA viruses
Halovirus HVTV-1 TN106 (KC117377)
25380
25306
-
Gln
TTG
[ENA]
¡û
Identical group No.422493 (1 seq.)
>PHG14102118
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
49029
48954
-
Thr
CGT
[ENA]
¡û
Identical group No.422494 (1 seq.)
>PHG14102123
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
46775
46700
-
Arg
TCG
[ENA]
¡û
Identical group No.422499 (1 seq.)
>PHG14200161
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
51710
51636
-
Phe
GAA
[ENA]
¡û
Identical group No.452547 (1 seq.)
>PHG14102001
KC117376
unclassified archaeal dsDNA viruses
Halovirus HSTV-2 TN106 (KC117376)
46404
46332
-
Gln
TTG
[ENA]
¡û
Identical group No.452548 (1 seq.)
>PHG14102106
KC292020
unclassified archaeal dsDNA viruses
Halovirus HRTV-8 Gb1 (KC292020)
52495
52422
-
Asn
GTT
[ENA]
¡û
Identical group No.564473 (2 seq.)
>PHG0100032
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
20735
20810
+
Asn
GTT
[ENA]
¡û
>PHG0100231
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
20735
20810
+
Asn
GTT
[ENA]
¡û
Identical group No.612258 (1 seq.)
>PHG14102110
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
55944
55871
-
Asn
GTT
[ENA]
¡û
Identical group No.620388 (1 seq.)
>PHG14102120
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48876
48804
-
Lys
TTT
[ENA]
¡û
Identical group No.620389 (1 seq.)
>PHG14102117
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
49103
49031
-
Thr
TGT
[ENA]
¡û
Identical group No.620390 (1 seq.)
>PHG14102114
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50347
50274
-
Tyr
GTA
[ENA]
¡û
Identical group No.620391 (1 seq.)
>PHG14102124
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
46430
46355
-
Arg
TCT
[ENA]
¡û
Identical group No.620392 (1 seq.)
>PHG14102121
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48162
48088
-
Gln
CTG
[ENA]
¡û
Identical group No.628096 (1 seq.)
>PHG14102107
KC292021
unclassified archaeal dsDNA viruses
Halovirus HRTV-7 Gb1 (KC292021)
45885
45813
-
Gln
TTG
[ENA]
¡û
Identical group No.653921 (1 seq.)
>PHG14102104
KC292020
unclassified archaeal dsDNA viruses
Halovirus HRTV-8 Gb1 (KC292020)
3000
3071
+
Pro
TGG
[ENA]
¡û
Identical group No.751560 (1 seq.)
>PHG14102108
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
2936
3007
+
Pro
TGG
[ENA]
¡û
Identical group No.756558 (1 seq.)
>PHG14102111
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
53420
53348
-
Arg
GCG
[ENA]
¡û
Identical group No.756564 (1 seq.)
>PHG14600093
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
49328
49226
-
Ala
TGC
[ENA]
¡û
Identical group No.779623 (1 seq.)
>PHG14102105
KC292020
unclassified archaeal dsDNA viruses
Halovirus HRTV-8 Gb1 (KC292020)
53707
53635
-
Gly
TCC
[ENA]
¡û
Identical group No.809982 (2 seq.)
>PHG0100033
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
74699
74628
-
Pro
TGG
[ENA]
¡û
>PHG0100232
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
72927
72856
-
Pro
TGG
[ENA]
¡û
Identical group No.826222 (1 seq.)
>PHG14102119
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48952
48880
-
Thr
GGT
[ENA]
¡û
Identical group No.826223 (1 seq.)
>PHG14102113
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50544
50474
-
Gly
GCC
[ENA]
¡û
Identical group No.826224 (1 seq.)
>PHG14102112
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50619
50549
-
Gly
TCC
[ENA]
¡û
Identical group No.826225 (1 seq.)
>PHG14102127
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
42840
42770
-
Pro
TGG
[ENA]
¡û
Identical group No.826232 (1 seq.)
>PHG14300351
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48320
48250
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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