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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381334 (1 seq.)
>SRA1042321
SRR035091.372572
454 Sequencing (SRP001812)
424
350
-
Val
AAC
[SRA]
Identical group No.439634 (1 seq.)
>SRA1016717
SRR035082.11525
454 Sequencing (SRP001803)
130
206
+
Val
AAC
[SRA]
Identical group No.453682 (1 seq.)
>SRA1035355
SRR035089.289290
454 Sequencing (SRP001810)
260
334
+
Val
AAC
[SRA]
Identical group No.467190 (32 seq.)
>WENV180045248
MOXS02096008
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
274
202
-
Val
AAC
[ENA]
¢þ
>WENV180046453
MPLT02097582
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
105
177
+
Val
AAC
[ENA]
¢þ
>WENV180046559
MPLT02108015
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180047822
MPLT02271864
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180053003
MPLU02339490
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
338
410
+
Val
AAC
[ENA]
¢þ
>WENV180053028
MPLU02340760
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
374
446
+
Val
AAC
[ENA]
¢þ
>WENV180107525
OAPF01225546
[OAPF] marine metagenome; ENVO:00002010
219
293
+
Val
AAC
[ENA]
¢þ
>WENV180356738
OBNL01015127
[OBNL] marine metagenome; ENVO:00002010
410
482
+
Val
AAC
[ENA]
¢þ
>WENV180383202
OBOU01009566
[OBOU] marine metagenome; ENV:00002010
317
389
+
Val
AAC
[ENA]
¢þ
>WENV180383962
OBOV01109520
[OBOV] marine metagenome; ENV:00002010
371
299
-
Val
AAC
[ENA]
¢þ
>WENV180386079
OBPB01031517
[OBPB] marine metagenome; Sterile flask
376
304
-
Val
AAC
[ENA]
¢þ
>WENV180588808
OCOQ01000554
[OCOQ] marine metagenome; ENVO:00002010
918
990
+
Val
AAC
[ENA]
¢þ
>WENV180641744
OCRN01034161
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
249
177
-
Val
AAC
[ENA]
¢þ
>WENV180650224
OCSY01000236
[OCSY] marine metagenome; 30 L Plastic container
1097
1025
-
Val
AAC
[ENA]
¢þ
>WENV181325114
OFLI01007120
[OFLI] seawater metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>WENV181385653
OFRJ01004008
[OFRJ] marine metagenome; seawater
126
198
+
Val
AAC
[ENA]
¢þ
>WENV182550563
OJCA01010216
[OJCA] seawater metagenome; Sea water
1003
1076
+
Val
AAC
[ENA]
¢þ
>WENV182551369
OJCC01003442
[OJCC] seawater metagenome; Sea water
583
655
+
Val
AAC
[ENA]
¢þ
>WENV182552852
OJCQ01001327
[OJCQ] seawater metagenome; Sea water
526
454
-
Val
AAC
[ENA]
¢þ
>WENV182554354
OJCU01002022
[OJCU] seawater metagenome; Sea water
948
876
-
Val
AAC
[ENA]
¢þ
>WENV182559200
OJDO01003867
[OJDO] seawater metagenome; Sea water
1907
1979
+
Val
AAC
[ENA]
¢þ
>WENV182570890
OJFF01006604
[OJFF] seawater metagenome; Sea water
343
415
+
Val
AAC
[ENA]
¢þ
>WENV183054279
OLGT01000031
[OLGT] seawater metagenome; Sea water
2623
2551
-
Val
AAC
[ENA]
¢þ
>WENV183618562
OOFO01007164
[OOFO] marine metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>ENV08000375
ABMC01057596
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
31
103
+
Val
AAC
[ENA]
¡û
>WENV183699825
OZSS01055898
[OZSS] metagenome; Seawater sample
751
823
+
Val
AAC
[ENA]
¢þ
>WENV183797152
PVBE010307997
[PVBE] marine metagenome; water
133
61
-
Val
AAC
[ENA]
¢þ
>WENV170569434
FLMP01203768
[FLMP] seawater metagenome; seawater
59
131
+
Val
AAC
[ENA]
¢þ
>WENV170569657
FLMP01263781
[FLMP] seawater metagenome; seawater
133
205
+
Val
AAC
[ENA]
¢þ
>SRA1000349
SRR001041.176137
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
31
103
+
Val
AAC
[SRA]
>WENV027941
AACY021084539
Marine microbial communities from Global Ocean Sampling (GOS)
331
406
+
Val
AAC
[ENA]
>WENV038071
AACY021905801
Marine microbial communities from Global Ocean Sampling (GOS)
228
153
-
Val
AAC
[ENA]
Identical group No.484362 (1 seq.)
>SRA1030838
SRR035087.337168
454 Sequencing (SRP001808)
246
171
-
Val
AAC
[SRA]
Identical group No.525558 (3 seq.)
>WENV183723845
PEAW01024378
[PEAW] mollusc metagenome; combination of 3 Haliotis diversicolor samples: VC2003, Pt131, and Pt118; samples were filtered
176
104
-
Val
AAC
[ENA]
¢þ
>SRA1014287
SRR023845.71329
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
62
-
Val
AAC
[SRA]
>SRA1014594
SRR023845.215281
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
5
-
Val
AAC
[SRA]
Identical group No.525587 (2 seq.)
>SRA1014983
SRR023845.409596
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
240
+
Val
AAC
[SRA]
>SRA1015674
SRR023846.153554
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
50
123
+
Val
AAC
[SRA]
Identical group No.538071 (1 seq.)
>SRA1003679
SRR002327.118350
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
4
78
+
Val
AAC
[SRA]
Identical group No.547491 (31 seq.)
>WENV170599034
FUWD010059584
[FUWD] metagenome; unknown
443
518
+
Val
AAC
[ENA]
¢þ
>WENV170617017
FUWD012911676
[FUWD] metagenome; unknown
544
472
-
Val
AAC
[ENA]
¢þ
>WENV170617023
FUWD012911677
[FUWD] metagenome; unknown
138
66
-
Val
AAC
[ENA]
¢þ
>WENV170617232
FUWD012918842
[FUWD] metagenome; unknown
386
461
+
Val
AAC
[ENA]
¢þ
>WENV170617237
FUWD012918843
[FUWD] metagenome; unknown
30
102
+
Val
AAC
[ENA]
¢þ
>SRA1026878
SRR035086.18754
454 Sequencing (SRP001807)
211
139
-
Val
AAC
[SRA]
>SRA1026892
SRR035086.21545
454 Sequencing (SRP001807)
148
73
-
Val
AAC
[SRA]
>SRA1026945
SRR035086.31202
454 Sequencing (SRP001807)
422
494
+
Val
AAC
[SRA]
>SRA1026952
SRR035086.32367
454 Sequencing (SRP001807)
180
108
-
Val
AAC
[SRA]
>SRA1026997
SRR035086.39968
454 Sequencing (SRP001807)
139
211
+
Val
AAC
[SRA]
>SRA1027006
SRR035086.43397
454 Sequencing (SRP001807)
278
203
-
Val
AAC
[SRA]
>SRA1027206
SRR035086.82073
454 Sequencing (SRP001807)
316
388
+
Val
AAC
[SRA]
>SRA1027348
SRR035086.110604
454 Sequencing (SRP001807)
455
527
+
Val
AAC
[SRA]
>SRA1027374
SRR035086.114438
454 Sequencing (SRP001807)
235
307
+
Val
AAC
[SRA]
>SRA1027549
SRR035086.146155
454 Sequencing (SRP001807)
195
270
+
Val
AAC
[SRA]
>SRA1027579
SRR035086.151271
454 Sequencing (SRP001807)
172
244
+
Val
AAC
[SRA]
>SRA1027615
SRR035086.160741
454 Sequencing (SRP001807)
96
24
-
Val
AAC
[SRA]
>SRA1027891
SRR035086.213296
454 Sequencing (SRP001807)
128
56
-
Val
AAC
[SRA]
>SRA1028056
SRR035086.248324
454 Sequencing (SRP001807)
248
320
+
Val
AAC
[SRA]
>SRA1028074
SRR035086.253100
454 Sequencing (SRP001807)
394
466
+
Val
AAC
[SRA]
>SRA1028136
SRR035086.266358
454 Sequencing (SRP001807)
51
126
+
Val
AAC
[SRA]
>SRA1028147
SRR035086.267153
454 Sequencing (SRP001807)
248
320
+
Val
AAC
[SRA]
>SRA1028329
SRR035086.300757
454 Sequencing (SRP001807)
427
352
-
Val
AAC
[SRA]
>SRA1028368
SRR035086.310236
454 Sequencing (SRP001807)
220
292
+
Val
AAC
[SRA]
>SRA1028574
SRR035086.362893
454 Sequencing (SRP001807)
209
137
-
Val
AAC
[SRA]
>SRA1028628
SRR035086.378197
454 Sequencing (SRP001807)
75
150
+
Val
AAC
[SRA]
>SRA1050733
SRR035096.7005
454 Sequencing (SRP001817)
217
145
-
Val
AAC
[SRA]
>SRA1050799
SRR035096.22181
454 Sequencing (SRP001817)
281
356
+
Val
AAC
[SRA]
>SRA1050976
SRR035096.64368
454 Sequencing (SRP001817)
156
231
+
Val
AAC
[SRA]
>SRA1051049
SRR035096.75463
454 Sequencing (SRP001817)
211
283
+
Val
AAC
[SRA]
>SRA1051403
SRR035096.167469
454 Sequencing (SRP001817)
77
149
+
Val
AAC
[SRA]
Identical group No.562853 (1 seq.)
>SRA1043283
SRR035092.89238
454 Sequencing (SRP001813)
356
281
-
Val
AAC
[SRA]
Identical group No.585268 (1 seq.)
>SRA1004295
SRR002328.254591
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
175
103
-
Val
AAC
[SRA]
Identical group No.593621 (5 seq.)
>SRA1027145
SRR035086.71354
454 Sequencing (SRP001807)
519
445
-
Val
AAC
[SRA]
>SRA1027686
SRR035086.173120
454 Sequencing (SRP001807)
234
308
+
Val
AAC
[SRA]
>SRA1027749
SRR035086.186042
454 Sequencing (SRP001807)
521
447
-
Val
AAC
[SRA]
>SRA1028507
SRR035086.342484
454 Sequencing (SRP001807)
219
293
+
Val
AAC
[SRA]
>SRA1028652
SRR035086.388764
454 Sequencing (SRP001807)
280
354
+
Val
AAC
[SRA]
Identical group No.593634 (1 seq.)
>SRA1027762
SRR035086.189774
454 Sequencing (SRP001807)
157
229
+
Val
AAC
[SRA]
Identical group No.593645 (1 seq.)
>SRA1028089
SRR035086.256945
454 Sequencing (SRP001807)
38
113
+
Val
AAC
[SRA]
Identical group No.593657 (1 seq.)
>SRA1028267
SRR035086.288744
454 Sequencing (SRP001807)
175
100
-
Val
AAC
[SRA]
Identical group No.593679 (1 seq.)
>SRA1028753
SRR035086.424648
454 Sequencing (SRP001807)
290
216
-
Val
AAC
[SRA]
Identical group No.620477 (1 seq.)
>SRA1051314
SRR035096.135635
454 Sequencing (SRP001817)
57
132
+
Val
AAC
[SRA]
Identical group No.739301 (1 seq.)
>SRA1005734
SRR014586.216510
Metagenomic analysis of viruses in reclaimed water (SRP000673)
67
141
+
Val
AAC
[SRA]
Identical group No.739355 (1 seq.)
>SRA1027852
SRR035086.206963
454 Sequencing (SRP001807)
507
436
-
Val
AAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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