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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180637154
OCRG01000779
339606
Alphaproteobacteria
>WENV180637276
OCRG01005674
147089
Alphaproteobacteria
ACG
Arg
>WENV180637801
OCRG01134360
200119
Alphaproteobacteria
CAT
Met
>WENV180637269
OCRG01005538
147334
Alphaproteobacteria
CAT
Met
>WENV180637092
OCRG01000103
282595
Alphaproteobacteria
CCA
Trp
>WENV180637095
OCRG01000123
147088
Alphaproteobacteria
CCT
Arg
>WENV180637524
OCRG01038332
284043
Alphaproteobacteria
CGT
Thr
>WENV180637418
OCRG01019855
348781
Alphaproteobacteria
GAA
Phe
>WENV180637128
OCRG01000399
338760
Alphaproteobacteria
GAA
Phe
>WENV180637110
OCRG01000204
435528
Alphaproteobacteria
GCA
Cys
>WENV180637486
OCRG01027927
435528
Alphaproteobacteria
GCA
Cys
>WENV180637904
OCRG01188590
369678
Alphaproteobacteria
GGT
Thr
>WENV180637175
OCRG01001589
338282
Alphaproteobacteria
GTT
Asn
>WENV180637285
OCRG01006104
338282
Alphaproteobacteria
GTT
Asn
>WENV180637097
OCRG01000131
412424
Alphaproteobacteria
TCC
Gly
>WENV180637081
OCRG01000035
177001
Alphaproteobacteria
TCT
Arg
>WENV180637227
OCRG01003575
256175
Alphaproteobacteria
TGT
Thr
>WENV180637124
OCRG01000362
339722
Alphaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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