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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1027324
SRR035086.106992
221462
Cyanobacteriota
CCT
Arg
>SRA1027390
SRR035086.116406
73307
Cyanobacteriota
CAG
Leu
>SRA1027435
SRR035086.124615
57522
Cyanobacteriota
CGA
Ser
>SRA1027451
SRR035086.126676
57522
Cyanobacteriota
CGA
Ser
>SRA1027592
SRR035086.154328
208578
Cyanobacteriota
CGG
Pro
>SRA1027698
SRR035086.176274
57522
Cyanobacteriota
CGA
Ser
>SRA1027744
SRR035086.184974
292138
Cyanobacteriota
CCA
Trp
>SRA1027842
SRR035086.204659
221462
Cyanobacteriota
CCT
Arg
>SRA1028003
SRR035086.234951
73307
Cyanobacteriota
CAG
Leu
>SRA1028027
SRR035086.240365
178673
Cyanobacteriota
CCG
Arg
>SRA1028046
SRR035086.246645
212126
Cyanobacteriota
GTC
Asp
>SRA1028179
SRR035086.270933
126285
Cyanobacteriota
GTA
Tyr
>SRA1028303
SRR035086.295447
57522
Cyanobacteriota
CGA
Ser
>SRA1028334
SRR035086.302364
183676
Cyanobacteriota
GAT
Ile
>SRA1028567
SRR035086.360146
221462
Cyanobacteriota
CCT
Arg
>SRA1027002
SRR035086.40675
57522
Cyanobacteriota
CGA
Ser
>SRA1027023
SRR035086.46014
73307
Cyanobacteriota
CAG
Leu
>SRA1027046
SRR035086.51201
16506
Cyanobacteriota
GCT
Ser
>SRA1027078
SRR035086.58345
178673
Cyanobacteriota
CCG
Arg
>SRA1027116
SRR035086.65700
453054
Cyanobacteriota
GAC
Val
>SRA1027141
SRR035086.70850
57522
Cyanobacteriota
CGA
Ser
>SRA1027237
SRR035086.87935
57522
Cyanobacteriota
CGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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