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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183725794
PJQF01017455
411593
Gammaproteobacteria
CCC
Gly
>WENV183725778
PJQF01015425
23711
Gammaproteobacteria
GGA
Ser
>WENV183725450
PJQF01000052
235837
Gammaproteobacteria
GTT
Asn
>WENV183725467
PJQF01000081
235837
Gammaproteobacteria
GTT
Asn
>WENV183726055
PJQF01070607
95633
Gammaproteobacteria
GTA
Tyr
>WENV183725417
PJQF01000001
58812
Gammaproteobacteria
TAA
Leu
>WENV183725422
PJQF01000006
58812
Gammaproteobacteria
TAA
Leu
>WENV183725698
PJQF01008649
98141
Gammaproteobacteria
TAG
Leu
>WENV183726367
PJQF01174426
238941
Gammaproteobacteria
>WENV183725428
PJQF01000010
238941
Gammaproteobacteria
>WENV183725426
PJQF01000010
238941
Gammaproteobacteria
>WENV183725484
PJQF01000144
16301
Gammaproteobacteria
TGA
Ser
>WENV183725448
PJQF01000045
16301
Gammaproteobacteria
TGA
Ser
>WENV183725492
PJQF01000193
347865
Gammaproteobacteria
>WENV183725899
PJQF01033259
339731
Gammaproteobacteria
CTG
Gln
>WENV183726113
PJQF01086820
412505
Gammaproteobacteria
GCA
Cys
>WENV183726267
PJQF01142384
2129
Gammaproteobacteria
>WENV183726457
PJQF01208736
144979
Gammaproteobacteria
CGG
Pro
>WENV183725766
PJQF01014177
16446
Gammaproteobacteria
GCT
Ser
>WENV183725717
PJQF01010218
145335
Gammaproteobacteria
GGG
Pro
>WENV183725441
PJQF01000023
145562
Gammaproteobacteria
CAT
Met
>WENV183725493
PJQF01000205
239650
Gammaproteobacteria
TGT
Thr
>WENV183725472
PJQF01000082
239650
Gammaproteobacteria
TGT
Thr
>WENV183725526
PJQF01000492
95729
Gammaproteobacteria
TAG
Leu
>WENV183725418
PJQF01000001
412511
Gammaproteobacteria
GCA
Cys
>WENV183726282
PJQF01146056
238307
Gammaproteobacteria
GAA
Phe
>WENV183726366
PJQF01174381
96066
Gammaproteobacteria
TAA
Leu
>WENV183725521
PJQF01000410
58859
Gammaproteobacteria
CAG
Leu
>WENV183725520
PJQF01000410
58859
Gammaproteobacteria
CAG
Leu
>WENV183725519
PJQF01000406
58859
Gammaproteobacteria
CAG
Leu
>WENV183725518
PJQF01000406
58859
Gammaproteobacteria
CAG
Leu
>WENV183725730
PJQF01011064
146908
Gammaproteobacteria
GGG
Pro
>WENV183725880
PJQF01030172
16238
Gammaproteobacteria
CGA
Ser
>WENV183725595
PJQF01003011
240182
Gammaproteobacteria
TTT
Lys
>WENV183725570
PJQF01001969
240182
Gammaproteobacteria
TTT
Lys
>WENV183725420
PJQF01000002
411785
Gammaproteobacteria
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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