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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170802020
MDSW01006166
457453
Gammaproteobacteria
TTT
Lys
>WENV170803385
MDSW01029342
457453
Gammaproteobacteria
TTT
Lys
>WENV170810861
MDSW01156305
457453
Gammaproteobacteria
TTT
Lys
>WENV170805001
MDSW01057151
271464
Gammaproteobacteria
TGG
Pro
>WENV170813482
MDSW01200857
271464
Gammaproteobacteria
TGG
Pro
>WENV170806445
MDSW01082015
274150
Gammaproteobacteria
CAT
Met
>WENV170809929
MDSW01140421
474520
Gammaproteobacteria
CCA
Trp
>WENV170808295
MDSW01112605
270982
Gammaproteobacteria
GAT
Ile
>WENV170812866
MDSW01190443
278942
Gammaproteobacteria
CCG
Arg
>WENV170808710
MDSW01119780
272023
Gammaproteobacteria
GAT
Ile
>WENV170804024
MDSW01040184
467367
Gammaproteobacteria
GGT
Thr
>WENV170812798
MDSW01189641
467367
Gammaproteobacteria
GGT
Thr
>WENV170814305
MDSW01214499
275003
Gammaproteobacteria
CAT
Met
>WENV170813521
MDSW01201497
452413
Gammaproteobacteria
GGC
Ala
>WENV170805767
MDSW01070380
457171
Gammaproteobacteria
GTT
Asn
>WENV170805149
MDSW01060054
457171
Gammaproteobacteria
GTT
Asn
>WENV170804087
MDSW01041138
457171
Gammaproteobacteria
GTT
Asn
>WENV170802723
MDSW01018528
457171
Gammaproteobacteria
GTT
Asn
>WENV170803837
MDSW01036601
451982
Gammaproteobacteria
GGC
Ala
>WENV170807422
MDSW01098315
273847
Gammaproteobacteria
CCT
Arg
>WENV170810228
MDSW01145263
282413
Gammaproteobacteria
ACG
Arg
>WENV170807355
MDSW01097171
452412
Gammaproteobacteria
GCC
Gly
>WENV170810257
MDSW01145756
456510
Gammaproteobacteria
GGC
Ala
>WENV170803617
MDSW01032681
275658
Gammaproteobacteria
TGG
Pro
>WENV170806518
MDSW01082967
275658
Gammaproteobacteria
TGG
Pro
>WENV170805025
MDSW01057547
301313
Gammaproteobacteria
TGG
Pro
>WENV170805427
MDSW01064782
301313
Gammaproteobacteria
TGG
Pro
>WENV170813151
MDSW01194808
459731
Gammaproteobacteria
GGT
Thr
>WENV170811584
MDSW01169329
459731
Gammaproteobacteria
GGT
Thr
>WENV170812539
MDSW01185334
452881
Gammaproteobacteria
TGT
Thr
>WENV170813691
MDSW01204735
452410
Gammaproteobacteria
TAC
Val
>WENV170806118
MDSW01077021
461062
Gammaproteobacteria
CCA
Trp
>WENV170809291
MDSW01129394
457459
Gammaproteobacteria
GGC
Ala
>WENV170812914
MDSW01191276
453897
Gammaproteobacteria
TAC
Val
>WENV170808540
MDSW01116547
455237
Gammaproteobacteria
TGT
Thr
>WENV170811578
MDSW01169217
273328
Gammaproteobacteria
GAC
Val
>WENV170804655
MDSW01051272
452407
Gammaproteobacteria
GAA
Phe
>WENV170807306
MDSW01096387
452407
Gammaproteobacteria
GAA
Phe
>WENV170809769
MDSW01137832
655195
Gammaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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