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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
93 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170911988
MDTE01113907
273854
Gammaproteobacteria
CAT
Met
>WENV170912092
MDTE01115358
779604
Gammaproteobacteria
GCA
Cys
>WENV170914284
MDTE01146266
457453
Gammaproteobacteria
TTT
Lys
>WENV170914285
MDTE01146266
457453
Gammaproteobacteria
TTT
Lys
>WENV170910940
MDTE01098695
278579
Gammaproteobacteria
GTC
Asp
>WENV170910942
MDTE01098695
278579
Gammaproteobacteria
GTC
Asp
>WENV170918258
MDTE01203866
278579
Gammaproteobacteria
GTC
Asp
>WENV170918260
MDTE01203866
278579
Gammaproteobacteria
GTC
Asp
>WENV170904130
MDTE01007994
271464
Gammaproteobacteria
TGG
Pro
>WENV170912442
MDTE01120979
271464
Gammaproteobacteria
TGG
Pro
>WENV170913170
MDTE01130808
271464
Gammaproteobacteria
TGG
Pro
>WENV170916887
MDTE01184497
271464
Gammaproteobacteria
TGG
Pro
>WENV170912444
MDTE01120979
452415
Gammaproteobacteria
GTG
His
>WENV170909215
MDTE01075253
656944
Gammaproteobacteria
CCT
Arg
>WENV170917545
MDTE01194111
273856
Gammaproteobacteria
GAC
Val
>WENV170917546
MDTE01194111
273856
Gammaproteobacteria
GAC
Val
>WENV170912577
MDTE01122837
270982
Gammaproteobacteria
GAT
Ile
>WENV170907667
MDTE01054783
112813
Gammaproteobacteria
CAG
Leu
>WENV170914337
MDTE01146914
272023
Gammaproteobacteria
GAT
Ile
>WENV170906095
MDTE01033947
272023
Gammaproteobacteria
GAT
Ile
>WENV170904780
MDTE01016703
467367
Gammaproteobacteria
GGT
Thr
>WENV170905112
MDTE01021372
300085
Gammaproteobacteria
ACG
Arg
>WENV170904182
MDTE01008543
273870
Gammaproteobacteria
ACG
Arg
>WENV170904183
MDTE01008543
273870
Gammaproteobacteria
ACG
Arg
>WENV170913048
MDTE01129252
276974
Gammaproteobacteria
GGG
Pro
>WENV170909403
MDTE01077778
456247
Gammaproteobacteria
CCA
Trp
>WENV170909657
MDTE01081064
454967
Gammaproteobacteria
TTT
Lys
>WENV170909658
MDTE01081064
454967
Gammaproteobacteria
TTT
Lys
>WENV170907389
MDTE01051314
458351
Gammaproteobacteria
TTG
Gln
>WENV170917961
MDTE01200031
457171
Gammaproteobacteria
GTT
Asn
>WENV170917819
MDTE01197904
457171
Gammaproteobacteria
GTT
Asn
>WENV170910408
MDTE01091699
457171
Gammaproteobacteria
GTT
Asn
>WENV170910363
MDTE01090943
457171
Gammaproteobacteria
GTT
Asn
>WENV170910207
MDTE01088723
274864
Gammaproteobacteria
ACG
Arg
>WENV170910208
MDTE01088723
274864
Gammaproteobacteria
ACG
Arg
>WENV170904181
MDTE01008543
12379
Gammaproteobacteria
GCT
Ser
>WENV170914282
MDTE01146266
278155
Gammaproteobacteria
TGG
Pro
>WENV170913887
MDTE01140332
278155
Gammaproteobacteria
TGG
Pro
>WENV170917224
MDTE01189630
451982
Gammaproteobacteria
GGC
Ala
>WENV170914398
MDTE01147924
451982
Gammaproteobacteria
GGC
Ala
>WENV170909618
MDTE01080543
451982
Gammaproteobacteria
GGC
Ala
>WENV170913828
MDTE01139701
271458
Gammaproteobacteria
GGG
Pro
>WENV170906875
MDTE01044879
271254
Gammaproteobacteria
CAT
Met
>WENV170913701
MDTE01138076
273847
Gammaproteobacteria
CCT
Arg
>WENV170903994
MDTE01006062
273857
Gammaproteobacteria
TGG
Pro
>WENV170916451
MDTE01178223
273122
Gammaproteobacteria
CAT
Met
>WENV170916452
MDTE01178223
273122
Gammaproteobacteria
CAT
Met
>WENV170914286
MDTE01146307
464809
Gammaproteobacteria
GAA
Phe
>WENV170916911
MDTE01184774
464809
Gammaproteobacteria
GAA
Phe
>WENV170912443
MDTE01120979
275462
Gammaproteobacteria
TCT
Arg
>WENV170916390
MDTE01177426
276973
Gammaproteobacteria
GAC
Val
>WENV170907210
MDTE01048929
114536
Gammaproteobacteria
CAA
Leu
>WENV170911987
MDTE01113907
655197
Gammaproteobacteria
TTG
Gln
>WENV170913589
MDTE01136770
46215
Gammaproteobacteria
GCT
Ser
>WENV170912091
MDTE01115358
452412
Gammaproteobacteria
GCC
Gly
>WENV170913476
MDTE01134964
452412
Gammaproteobacteria
GCC
Gly
>WENV170909916
MDTE01084731
460378
Gammaproteobacteria
TAC
Val
>WENV170909543
MDTE01079588
218101
Gammaproteobacteria
GTA
Tyr
>WENV170917015
MDTE01186363
780765
Gammaproteobacteria
CCC
Gly
>WENV170916502
MDTE01178804
271460
Gammaproteobacteria
CGG
Pro
>WENV170906818
MDTE01044010
452404
Gammaproteobacteria
TGT
Thr
>WENV170903995
MDTE01006062
273858
Gammaproteobacteria
TCT
Arg
>WENV170917714
MDTE01196411
275549
Gammaproteobacteria
CAT
Met
>WENV170910023
MDTE01085995
271459
Gammaproteobacteria
CCT
Arg
>WENV170916976
MDTE01185809
301313
Gammaproteobacteria
TGG
Pro
>WENV170909544
MDTE01079588
780101
Gammaproteobacteria
TCC
Gly
>WENV170913890
MDTE01140332
274148
Gammaproteobacteria
GTC
Asp
>WENV170909963
MDTE01085313
781121
Gammaproteobacteria
GCA
Cys
>WENV170912952
MDTE01128032
271200
Gammaproteobacteria
CAT
Met
>WENV170913590
MDTE01136770
271456
Gammaproteobacteria
ACG
Arg
>WENV170913591
MDTE01136770
271456
Gammaproteobacteria
ACG
Arg
>WENV170914786
MDTE01153841
271456
Gammaproteobacteria
ACG
Arg
>WENV170910726
MDTE01096078
273754
Gammaproteobacteria
GTT
Asn
>WENV170910727
MDTE01096078
273754
Gammaproteobacteria
GTT
Asn
>WENV170912581
MDTE01122837
459731
Gammaproteobacteria
GGT
Thr
>WENV170905889
MDTE01030935
113485
Gammaproteobacteria
CAA
Leu
>WENV170910803
MDTE01096812
452881
Gammaproteobacteria
TGT
Thr
>WENV170914465
MDTE01148858
454969
Gammaproteobacteria
GTT
Asn
>WENV170914464
MDTE01148858
454969
Gammaproteobacteria
GTT
Asn
>WENV170914399
MDTE01147924
459479
Gammaproteobacteria
TTC
Glu
>WENV170913479
MDTE01135007
273845
Gammaproteobacteria
GGG
Pro
>WENV170903648
MDTE01001185
112371
Gammaproteobacteria
CAA
Leu
>WENV170912145
MDTE01116462
276972
Gammaproteobacteria
CCA
Trp
>WENV170915300
MDTE01161508
276972
Gammaproteobacteria
CCA
Trp
>WENV170909515
MDTE01079341
459319
Gammaproteobacteria
GAA
Phe
>WENV170908523
MDTE01065748
452414
Gammaproteobacteria
TTC
Glu
>WENV170906729
MDTE01042339
112814
Gammaproteobacteria
GAG
Leu
>WENV170909545
MDTE01079588
655194
Gammaproteobacteria
GGT
Thr
>WENV170904932
MDTE01018875
276372
Gammaproteobacteria
ACG
Arg
>WENV170912278
MDTE01118196
30792
Gammaproteobacteria
GGA
Ser
>WENV170914158
MDTE01144179
273328
Gammaproteobacteria
GAC
Val
>WENV170906730
MDTE01042339
271253
Gammaproteobacteria
CAT
Met
>WENV170915773
MDTE01168804
274093
Gammaproteobacteria
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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