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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170079329
CDZW01001143
193809
Bacteroidetes
CAT
Met
>WENV170079345
CDZW01001654
151960
Bacteroidetes
GGC
Ala
>WENV170079346
CDZW01001661
235102
Bacteroidetes
CGT
Thr
>WENV170079359
CDZW01002127
113604
Bacteroidetes
>WENV170079362
CDZW01002127
113604
Bacteroidetes
>WENV170079379
CDZW01002526
243025
Bacteroidetes
CAT
Met
>WENV170079467
CDZW01005765
411543
Bacteroidetes
CTG
Gln
>WENV170079468
CDZW01005769
80607
Bacteroidetes
GTA
Tyr
>WENV170079478
CDZW01006035
154643
Bacteroidetes
CAT
Met
>WENV170079483
CDZW01006400
313363
Bacteroidetes
GAA
Phe
>WENV170079500
CDZW01006960
436206
Bacteroidetes
TTG
Gln
>WENV170079513
CDZW01007567
143169
Bacteroidetes
GGG
Pro
>WENV170079563
CDZW01009480
436206
Bacteroidetes
TTG
Gln
>WENV170079635
CDZW01011999
126641
Bacteroidetes
TAC
Val
>WENV170079636
CDZW01011999
126641
Bacteroidetes
TAC
Val
>WENV170079637
CDZW01011999
126641
Bacteroidetes
TAC
Val
>WENV170079650
CDZW01012399
143169
Bacteroidetes
GGG
Pro
>WENV170079653
CDZW01012709
80607
Bacteroidetes
GTA
Tyr
>WENV170079666
CDZW01013201
94703
Bacteroidetes
GTA
Tyr
>WENV170079712
CDZW01015809
243025
Bacteroidetes
CAT
Met
>WENV170079727
CDZW01015912
436206
Bacteroidetes
TTG
Gln
>WENV170079738
CDZW01016553
243025
Bacteroidetes
CAT
Met
>WENV170079755
CDZW01017780
80607
Bacteroidetes
GTA
Tyr
>WENV170079764
CDZW01018143
414426
Bacteroidetes
CTG
Gln
>WENV170079765
CDZW01018186
23696
Bacteroidetes
GCT
Ser
>WENV170079766
CDZW01018186
338155
Bacteroidetes
CTC
Glu
>WENV170079778
CDZW01018611
313363
Bacteroidetes
GAA
Phe
>WENV170079799
CDZW01019633
94703
Bacteroidetes
GTA
Tyr
>WENV170079806
CDZW01019682
235207
Bacteroidetes
CAT
Met
>WENV170079849
CDZW01021113
56823
Bacteroidetes
TGA
Ser
>WENV170079853
CDZW01021279
80607
Bacteroidetes
GTA
Tyr
>WENV170079914
CDZW01024341
94703
Bacteroidetes
GTA
Tyr
>WENV170079933
CDZW01024922
144933
Bacteroidetes
TCT
Arg
>WENV170079934
CDZW01025079
17323
Bacteroidetes
GGA
Ser
>WENV170079939
CDZW01025454
56823
Bacteroidetes
TGA
Ser
>WENV170079998
CDZW01028280
94703
Bacteroidetes
GTA
Tyr
>WENV170080003
CDZW01028283
338124
Bacteroidetes
CCG
Arg
>WENV170080004
CDZW01028287
338155
Bacteroidetes
CTC
Glu
>WENV170080026
CDZW01029438
16224
Bacteroidetes
GGA
Ser
>WENV170080072
CDZW01030549
414426
Bacteroidetes
CTG
Gln
>WENV170080091
CDZW01030927
56823
Bacteroidetes
TGA
Ser
>WENV170080092
CDZW01030927
144656
Bacteroidetes
GTG
His
>WENV170080123
CDZW01032056
235207
Bacteroidetes
CAT
Met
>WENV170080132
CDZW01032455
144655
Bacteroidetes
GGC
Ala
>WENV170080143
CDZW01032766
126641
Bacteroidetes
TAC
Val
>WENV170080144
CDZW01032766
126641
Bacteroidetes
TAC
Val
>WENV170080156
CDZW01032866
344692
Bacteroidetes
GGT
Thr
>WENV170080171
CDZW01033607
56823
Bacteroidetes
TGA
Ser
>WENV170080231
CDZW01036243
16224
Bacteroidetes
GGA
Ser
>WENV170080238
CDZW01036622
95559
Bacteroidetes
TAG
Leu
>WENV170080254
CDZW01037317
143169
Bacteroidetes
GGG
Pro
>WENV170080302
CDZW01040099
353927
Bacteroidetes
TTC
Glu
>WENV170080314
CDZW01040897
154643
Bacteroidetes
CAT
Met
>WENV170080326
CDZW01041304
113604
Bacteroidetes
>WENV170080329
CDZW01041304
113604
Bacteroidetes
>WENV170080332
CDZW01041304
113604
Bacteroidetes
>WENV170080354
CDZW01042419
94703
Bacteroidetes
GTA
Tyr
>WENV170080369
CDZW01043989
411629
Bacteroidetes
TTG
Gln
>WENV170080386
CDZW01044436
436206
Bacteroidetes
TTG
Gln
>WENV170080421
CDZW01045526
80607
Bacteroidetes
GTA
Tyr
>WENV170080443
CDZW01046245
238121
Bacteroidetes
CTT
Lys
>WENV170080453
CDZW01046622
154643
Bacteroidetes
CAT
Met
>WENV170080455
CDZW01046630
143169
Bacteroidetes
GGG
Pro
>WENV170080491
CDZW01048418
19528
Bacteroidetes
GGA
Ser
>WENV170080492
CDZW01048611
414426
Bacteroidetes
CTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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