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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1026999
SRR035086.40161
254318
Cyanobacteriota
CAT
Met
>SRA1027085
SRR035086.60165
254318
Cyanobacteriota
CAT
Met
>SRA1027493
SRR035086.134713
254318
Cyanobacteriota
CAT
Met
>SRA1027984
SRR035086.231495
254318
Cyanobacteriota
CAT
Met
>SRA1027592
SRR035086.154328
148812
Cyanobacteriota
CGG
Pro
>SRA1027046
SRR035086.51201
11030
Cyanobacteriota
GCT
Ser
>SRA1028078
SRR035086.253997
344607
Cyanobacteriota
CCC
Gly
>SRA1028094
SRR035086.257753
344607
Cyanobacteriota
CCC
Gly
>SRA1028529
SRR035086.349454
344607
Cyanobacteriota
CCC
Gly
>SRA1028734
SRR035086.413605
344607
Cyanobacteriota
CCC
Gly
>SRA1027116
SRR035086.65700
387387
Cyanobacteriota
GAC
Val
>SRA1027002
SRR035086.40675
45941
Cyanobacteriota
CGA
Ser
>SRA1027141
SRR035086.70850
45941
Cyanobacteriota
CGA
Ser
>SRA1027237
SRR035086.87935
45941
Cyanobacteriota
CGA
Ser
>SRA1027435
SRR035086.124615
45941
Cyanobacteriota
CGA
Ser
>SRA1027451
SRR035086.126676
45941
Cyanobacteriota
CGA
Ser
>SRA1027698
SRR035086.176274
45941
Cyanobacteriota
CGA
Ser
>SRA1028303
SRR035086.295447
45941
Cyanobacteriota
CGA
Ser
>SRA1027257
SRR035086.91354
339061
Cyanobacteriota
CAC
Val
>SRA1027828
SRR035086.202430
339061
Cyanobacteriota
CAC
Val
>SRA1027888
SRR035086.212635
339061
Cyanobacteriota
CAC
Val
>SRA1027023
SRR035086.46014
58999
Cyanobacteriota
CAG
Leu
>SRA1027390
SRR035086.116406
58999
Cyanobacteriota
CAG
Leu
>SRA1028003
SRR035086.234951
58999
Cyanobacteriota
CAG
Leu
>SRA1028065
SRR035086.249299
349605
Cyanobacteriota
GTT
Asn
>SRA1027813
SRR035086.199157
236930
Cyanobacteriota
CGC
Ala
>SRA1028238
SRR035086.281002
236930
Cyanobacteriota
CGC
Ala
>SRA1028140
SRR035086.266623
190959
Cyanobacteriota
GTC
Asp
>SRA1027744
SRR035086.184974
275071
Cyanobacteriota
CCA
Trp
>SRA1027062
SRR035086.54586
301510
Cyanobacteriota
TGC
Ala
>SRA1027789
SRR035086.192160
301510
Cyanobacteriota
TGC
Ala
>SRA1028367
SRR035086.309989
301510
Cyanobacteriota
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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