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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1051964
SRR035098.114648
254318
Cyanobacteriota
CAT
Met
>SRA1052272
SRR035098.173000
254318
Cyanobacteriota
CAT
Met
>SRA1052509
SRR035098.217316
254318
Cyanobacteriota
CAT
Met
>SRA1052612
SRR035098.237211
254318
Cyanobacteriota
CAT
Met
>SRA1053393
SRR035098.397811
254318
Cyanobacteriota
CAT
Met
>SRA1053780
SRR035098.494643
254318
Cyanobacteriota
CAT
Met
>SRA1051577
SRR035098.33331
148812
Cyanobacteriota
CGG
Pro
>SRA1052217
SRR035098.161755
148812
Cyanobacteriota
CGG
Pro
>SRA1052380
SRR035098.192501
148812
Cyanobacteriota
CGG
Pro
>SRA1052519
SRR035098.219599
148812
Cyanobacteriota
CGG
Pro
>SRA1052793
SRR035098.277110
148812
Cyanobacteriota
CGG
Pro
>SRA1052937
SRR035098.303528
148812
Cyanobacteriota
CGG
Pro
>SRA1053467
SRR035098.411852
148812
Cyanobacteriota
CGG
Pro
>SRA1053788
SRR035098.495796
148812
Cyanobacteriota
CGG
Pro
>SRA1051996
SRR035098.121098
11030
Cyanobacteriota
GCT
Ser
>SRA1053417
SRR035098.401809
11030
Cyanobacteriota
GCT
Ser
>SRA1051728
SRR035098.64774
344607
Cyanobacteriota
CCC
Gly
>SRA1051781
SRR035098.75097
344607
Cyanobacteriota
CCC
Gly
>SRA1051963
SRR035098.114493
344607
Cyanobacteriota
CCC
Gly
>SRA1051971
SRR035098.115053
344607
Cyanobacteriota
CCC
Gly
>SRA1052018
SRR035098.124430
344607
Cyanobacteriota
CCC
Gly
>SRA1052045
SRR035098.129309
344607
Cyanobacteriota
CCC
Gly
>SRA1052639
SRR035098.241701
344607
Cyanobacteriota
CCC
Gly
>SRA1052721
SRR035098.260808
344607
Cyanobacteriota
CCC
Gly
>SRA1052810
SRR035098.279794
344607
Cyanobacteriota
CCC
Gly
>SRA1052900
SRR035098.296766
344607
Cyanobacteriota
CCC
Gly
>SRA1052996
SRR035098.315474
344607
Cyanobacteriota
CCC
Gly
>SRA1053036
SRR035098.323482
344607
Cyanobacteriota
CCC
Gly
>SRA1053039
SRR035098.324211
344607
Cyanobacteriota
CCC
Gly
>SRA1053054
SRR035098.325747
344607
Cyanobacteriota
CCC
Gly
>SRA1053645
SRR035098.459659
344607
Cyanobacteriota
CCC
Gly
>SRA1051564
SRR035098.30279
387387
Cyanobacteriota
GAC
Val
>SRA1051944
SRR035098.111204
387387
Cyanobacteriota
GAC
Val
>SRA1051975
SRR035098.116124
387387
Cyanobacteriota
GAC
Val
>SRA1052324
SRR035098.182685
387387
Cyanobacteriota
GAC
Val
>SRA1052379
SRR035098.192435
387387
Cyanobacteriota
GAC
Val
>SRA1052657
SRR035098.247001
387387
Cyanobacteriota
GAC
Val
>SRA1052877
SRR035098.290187
387387
Cyanobacteriota
GAC
Val
>SRA1053669
SRR035098.463022
387387
Cyanobacteriota
GAC
Val
>SRA1051649
SRR035098.48402
45941
Cyanobacteriota
CGA
Ser
>SRA1051758
SRR035098.71335
45941
Cyanobacteriota
CGA
Ser
>SRA1052022
SRR035098.124849
45941
Cyanobacteriota
CGA
Ser
>SRA1052035
SRR035098.127603
45941
Cyanobacteriota
CGA
Ser
>SRA1052080
SRR035098.136528
45941
Cyanobacteriota
CGA
Ser
>SRA1052962
SRR035098.308633
25356
Cyanobacteriota
GGA
Ser
>SRA1051673
SRR035098.56187
339061
Cyanobacteriota
CAC
Val
>SRA1052298
SRR035098.177103
339061
Cyanobacteriota
CAC
Val
>SRA1052325
SRR035098.182994
339061
Cyanobacteriota
CAC
Val
>SRA1052854
SRR035098.285965
339061
Cyanobacteriota
CAC
Val
>SRA1053372
SRR035098.393532
339061
Cyanobacteriota
CAC
Val
>SRA1053533
SRR035098.429890
339061
Cyanobacteriota
CAC
Val
>SRA1053683
SRR035098.467685
339061
Cyanobacteriota
CAC
Val
>SRA1051600
SRR035098.36880
58999
Cyanobacteriota
CAG
Leu
>SRA1051909
SRR035098.100867
58999
Cyanobacteriota
CAG
Leu
>SRA1051943
SRR035098.111084
58999
Cyanobacteriota
CAG
Leu
>SRA1052283
SRR035098.174969
58999
Cyanobacteriota
CAG
Leu
>SRA1052350
SRR035098.185681
58999
Cyanobacteriota
CAG
Leu
>SRA1052428
SRR035098.200788
58999
Cyanobacteriota
CAG
Leu
>SRA1052685
SRR035098.253178
58999
Cyanobacteriota
CAG
Leu
>SRA1052906
SRR035098.298009
58999
Cyanobacteriota
CAG
Leu
>SRA1052964
SRR035098.309013
58999
Cyanobacteriota
CAG
Leu
>SRA1053302
SRR035098.377953
58999
Cyanobacteriota
CAG
Leu
>SRA1053402
SRR035098.398880
58999
Cyanobacteriota
CAG
Leu
>SRA1053405
SRR035098.399683
58999
Cyanobacteriota
CAG
Leu
>SRA1051471
SRR035098.8315
158847
Cyanobacteriota
GAT
Ile
>SRA1051695
SRR035098.60263
158847
Cyanobacteriota
GAT
Ile
>SRA1051701
SRR035098.61272
158847
Cyanobacteriota
GAT
Ile
>SRA1051973
SRR035098.116044
158847
Cyanobacteriota
GAT
Ile
>SRA1052033
SRR035098.127585
158847
Cyanobacteriota
GAT
Ile
>SRA1052306
SRR035098.179110
158847
Cyanobacteriota
GAT
Ile
>SRA1052336
SRR035098.183989
158847
Cyanobacteriota
GAT
Ile
>SRA1052558
SRR035098.228827
158847
Cyanobacteriota
GAT
Ile
>SRA1053597
SRR035098.448644
158847
Cyanobacteriota
GAT
Ile
>SRA1051947
SRR035098.111825
349605
Cyanobacteriota
GTT
Asn
>SRA1052036
SRR035098.127718
349605
Cyanobacteriota
GTT
Asn
>SRA1052407
SRR035098.197387
349605
Cyanobacteriota
GTT
Asn
>SRA1052667
SRR035098.249151
349605
Cyanobacteriota
GTT
Asn
>SRA1052804
SRR035098.278745
349605
Cyanobacteriota
GTT
Asn
>SRA1053012
SRR035098.317925
349605
Cyanobacteriota
GTT
Asn
>SRA1053153
SRR035098.349098
349605
Cyanobacteriota
GTT
Asn
>SRA1053313
SRR035098.380189
349605
Cyanobacteriota
GTT
Asn
>SRA1053319
SRR035098.381998
349605
Cyanobacteriota
GTT
Asn
>SRA1053493
SRR035098.417677
349605
Cyanobacteriota
GTT
Asn
>SRA1053497
SRR035098.419449
349605
Cyanobacteriota
GTT
Asn
>SRA1051739
SRR035098.67882
236930
Cyanobacteriota
CGC
Ala
>SRA1052467
SRR035098.209230
236930
Cyanobacteriota
CGC
Ala
>SRA1052790
SRR035098.275929
236930
Cyanobacteriota
CGC
Ala
>SRA1052840
SRR035098.283583
236930
Cyanobacteriota
CGC
Ala
>SRA1053020
SRR035098.318820
236930
Cyanobacteriota
CGC
Ala
>SRA1053198
SRR035098.360388
236930
Cyanobacteriota
CGC
Ala
>SRA1053855
SRR035098.517092
236930
Cyanobacteriota
CGC
Ala
>SRA1051659
SRR035098.51670
275071
Cyanobacteriota
CCA
Trp
>SRA1051995
SRR035098.120932
275071
Cyanobacteriota
CCA
Trp
>SRA1052084
SRR035098.137448
275071
Cyanobacteriota
CCA
Trp
>SRA1052403
SRR035098.196494
275071
Cyanobacteriota
CCA
Trp
>SRA1052569
SRR035098.231435
275071
Cyanobacteriota
CCA
Trp
>SRA1052595
SRR035098.234833
275071
Cyanobacteriota
CCA
Trp
>SRA1052764
SRR035098.269362
275071
Cyanobacteriota
CCA
Trp
>SRA1052899
SRR035098.296188
275071
Cyanobacteriota
CCA
Trp
>SRA1052916
SRR035098.299615
275071
Cyanobacteriota
CCA
Trp
>SRA1052995
SRR035098.315470
275071
Cyanobacteriota
CCA
Trp
>SRA1053391
SRR035098.397348
275071
Cyanobacteriota
CCA
Trp
>SRA1053580
SRR035098.443356
275071
Cyanobacteriota
CCA
Trp
>SRA1052203
SRR035098.159788
237009
Cyanobacteriota
GGC
Ala
>SRA1052332
SRR035098.183429
237009
Cyanobacteriota
GGC
Ala
>SRA1052896
SRR035098.295889
237009
Cyanobacteriota
GGC
Ala
>SRA1052945
SRR035098.305341
237009
Cyanobacteriota
GGC
Ala
>SRA1053196
SRR035098.359549
237009
Cyanobacteriota
GGC
Ala
>SRA1053225
SRR035098.364245
237009
Cyanobacteriota
GGC
Ala
>SRA1053226
SRR035098.364550
237009
Cyanobacteriota
GGC
Ala
>SRA1053358
SRR035098.390750
237009
Cyanobacteriota
GGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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