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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170224818
CEQE01087424
193373
Alphaproteobacteria
CGG
Pro
>WENV170224318
CEQE01044938
400518
Alphaproteobacteria
GAA
Phe
>WENV170224349
CEQE01048138
178731
Alphaproteobacteria
GTC
Asp
>WENV170224417
CEQE01052436
303339
Alphaproteobacteria
GGC
Ala
>WENV170225157
CEQE01113318
178734
Alphaproteobacteria
TGG
Pro
>WENV170224658
CEQE01070838
121250
Alphaproteobacteria
TAG
Leu
>WENV170225156
CEQE01113318
178733
Alphaproteobacteria
CAT
Met
>WENV170226558
CEQE01323608
73167
Alphaproteobacteria
GAG
Leu
>WENV170224914
CEQE01096410
192275
Alphaproteobacteria
GTG
His
>WENV170223915
CEQE01015231
400517
Alphaproteobacteria
GGT
Thr
>WENV170225904
CEQE01190602
419842
Alphaproteobacteria
GCC
Gly
>WENV170225164
CEQE01114164
481098
Alphaproteobacteria
CTG
Gln
>WENV170225901
CEQE01189685
178240
Alphaproteobacteria
GTC
Asp
>WENV170224387
CEQE01050727
313857
Alphaproteobacteria
TGC
Ala
>WENV170224607
CEQE01067085
282981
Alphaproteobacteria
CCA
Trp
>WENV170225888
CEQE01185613
480900
Alphaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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