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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170225678
CEQE01147626
123265
Gammaproteobacteria
GAG
Leu
>WENV170223772
CEQE01004872
178164
Gammaproteobacteria
GAT
Ile
>WENV170223734
CEQE01002200
179283
Gammaproteobacteria
ACG
Arg
>WENV170226175
CEQE01269355
20618
Gammaproteobacteria
GGA
Ser
>WENV170224271
CEQE01041362
311084
Gammaproteobacteria
GCC
Gly
>WENV170224342
CEQE01047276
313852
Gammaproteobacteria
TTC
Glu
>WENV170226326
CEQE01302288
292006
Gammaproteobacteria
TGC
Ala
>WENV170224272
CEQE01041362
480629
Gammaproteobacteria
GCA
Cys
>WENV170224198
CEQE01036177
20487
Gammaproteobacteria
TGA
Ser
>WENV170225792
CEQE01148866
56694
Gammaproteobacteria
GGA
Ser
>WENV170223840
CEQE01008989
197498
Gammaproteobacteria
TGG
Pro
>WENV170225717
CEQE01148329
488965
Gammaproteobacteria
GCA
Cys
>WENV170224067
CEQE01025308
282683
Gammaproteobacteria
GGC
Ala
>WENV170223909
CEQE01014450
73504
Gammaproteobacteria
TAA
Leu
>WENV170224164
CEQE01033161
180680
Gammaproteobacteria
GAC
Val
>WENV170224496
CEQE01057918
176301
Gammaproteobacteria
GAT
Ile
>WENV170223738
CEQE01002392
180681
Gammaproteobacteria
TGG
Pro
>WENV170224435
CEQE01054184
400372
Gammaproteobacteria
CCT
Arg
>WENV170225788
CEQE01148846
201377
Gammaproteobacteria
TGG
Pro
>WENV170223908
CEQE01014450
481250
Gammaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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