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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1004157
SRR002328.176285
179956
Bacteroidota
GTT
Asn
>SRA1004065
SRR002328.128959
179956
Bacteroidota
GTT
Asn
>SRA1003878
SRR002328.3444
481341
Bacteroidota
GCA
Cys
>SRA1004054
SRR002328.117799
240785
Bacteroidota
GTC
Asp
>SRA1004031
SRR002328.105148
349713
Bacteroidota
TCC
Gly
>SRA1004248
SRR002328.221984
283107
Bacteroidota
GCC
Gly
>SRA1004044
SRR002328.113003
407945
Bacteroidota
TTC
Glu
>SRA1003918
SRR002328.34026
407945
Bacteroidota
TTC
Glu
>SRA1003982
SRR002328.71442
22112
Bacteroidota
GCT
Ser
>SRA1004220
SRR002328.206353
178367
Bacteroidota
TCT
Arg
>SRA1004046
SRR002328.113800
182413
Bacteroidota
GGC
Ala
>SRA1004050
SRR002328.116314
195079
Bacteroidota
ACG
Arg
>SRA1004324
SRR002328.276793
480994
Bacteroidota
>SRA1004309
SRR002328.263258
179905
Bacteroidota
GTT
Asn
>SRA1003933
SRR002328.47061
179905
Bacteroidota
GTT
Asn
>SRA1003887
SRR002328.10214
287318
Bacteroidota
GAA
Phe
>SRA1003875
SRR002328.668
179687
Bacteroidota
GTG
His
>SRA1004255
SRR002328.226211
179686
Bacteroidota
CGG
Pro
>SRA1003894
SRR002328.15992
179686
Bacteroidota
CGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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