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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Identical Sequence Group (ENV vs Complete Genome) [ 95% (3-nt difference) ]
Reliable assignment
Tentative assignment
ENV
Page 1 : Acid Mine Drainage microbial communities from Richmond mine --- [AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
Page 2 : [APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell --- [CDZX] gut metagenome; human stools
Page 3 : [CDZY] gut metagenome; human stools --- [CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
Page 4 : [CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) --- [CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
Page 5 : [CETT] marine metagenome genome assembly TARA_110_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) --- [CXPH] human gut metagenome genome assembly hA11, contig; ENVO:feces
Page 6 : [CXPI] human gut metagenome genome assembly hA1, contig hA1_contig000381.; ENVO:feces --- [CXTF] Human gut metagenome genome assembly, contig: mB10_contig000231.; ENVO:feces
Page 7 : [CXTG] Human gut metagenome genome assembly, contig: mE11_contig000243.; ENVO:feces --- [CZKW] soil metagenome genome assembly CiPEHR-AK-2010-FBin.13, contig:; soil
Page 8 : [CZKX] soil metagenome genome assembly CiPEHR-AK-2010-FBin.25, contig:; soil --- [FPLO] metagenome; unknown
Page 9 : [FPLP] metagenome; unknown --- [FSVY] metagenome; soil
Page 10 : [FSVZ] metagenome; soil --- [FSZU] metagenome; soil
Page 11 : [FSZV] metagenome; soil --- [FTDT] metagenome; soil
Page 12 : [FTDU] metagenome; soil --- [FTHT] metagenome; soil
Page 13 : [FTHU] metagenome; soil --- [FZPZ] metagenome; underground water
Page 14 : [JAHE] sediment metagenome; lake sediment --- [LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
Page 15 : [LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the --- [MAVL] viral metagenome; RNA from tracheal sample collected at farm Jay, Vaghasi
Page 16 : [MAVM] viral metagenome; RNA from tracheal sample collected at farm Faizan, Anklav --- [MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
Page 17 : [MWWH] soil metagenome; MG3-2 sample; Antarctic (ecotone) soil --- [OARC] human gut metagenome; ENVO:feces
Page 18 : [OARD] human gut metagenome; ENVO:feces --- [OAUY] human gut metagenome; faeces
Page 19 : [OAUZ] human gut metagenome; faeces --- [OAYU] human gut metagenome; human gut
Page 20 : [OAYV] human gut metagenome; human gut --- [OBCQ] human gut metagenome; human gut
Page 21 : [OBCS] metagenome; diffuse fluid --- [OBHS] metagenome; freshwater sediment
Page 22 : [OBHT] metagenome; hydrothermal vent --- [OBND] sediment metagenome; sediment
Page 23 : [OBNE] groundwater metagenome; groundwater --- [OBRI] human gut metagenome; ENVO:feces
Page 24 : [OBRJ] human gut metagenome; ENVO:feces --- [OBVE] human gut metagenome; faeces
Page 25 : [OBVF] human gut metagenome; faeces --- [OBZA] human gut metagenome; faeces
Page 26 : [OBZB] human gut metagenome; faeces --- [OCCW] human gut metagenome; human gut
Page 27 : [OCCX] human gut metagenome; human gut --- [OCGU] soil metagenome; soil
Page 28 : [OCGV] soil metagenome; soil --- [OCKQ] human gut metagenome; Sample_08-Antrum-B2
Page 29 : [OCKR] human gut metagenome; Sample_11-Tumor-B1 --- [OCQI] human gut metagenome; human gut
Page 30 : [OCQJ] human gut metagenome; human gut --- [ODAS] human metagenome; G_DNA_Anterior nares
Page 31 : [ODAT] human metagenome; G_DNA_Posterior fornix --- [ODEO] human metagenome; G_DNA_Supragingival plaque
Page 32 : [ODEP] human metagenome; G_DNA_Tongue dorsum --- [ODIL] human metagenome; G_DNA_Supragingival plaque
Page 33 : [ODIM] human metagenome; G_DNA_Supragingival plaque --- [ODMH] human metagenome; G_DNA_Anterior nares
Page 34 : [ODMI] human metagenome; G_DNA_Buccal mucosa --- [ODQD] human metagenome; G_DNA_Stool
Page 35 : [ODQE] human metagenome; G_DNA_Stool --- [ODTZ] human metagenome; G_DNA_Stool
Page 36 : [ODUA] human metagenome; G_DNA_Posterior fornix --- [ODXV] human metagenome; G_DNA_Tongue dorsum
Page 37 : [ODXW] human metagenome; G_DNA_Tongue dorsum --- [OEBS] human gut metagenome; human gut
Page 38 : [OEBT] human gut metagenome; human gut --- [OEGC] human metagenome; G_DNA_Anterior nares
Page 39 : [OEGD] human metagenome; G_DNA_L_Retroauricular crease --- [OEKF] metagenome; 1998
Page 40 : [OEKG] metagenome; 1998 --- [OEQO] metagenome; water of meat washing
Page 41 : [OEQP] metagenome; Caecal content --- [OFDD] metagenome; hydrothermal vent
Page 42 : [OFDE] metagenome; hydrothermal vent --- [OFIA] marine metagenome; seawater
Page 43 : [OFIB] marine metagenome; seawater --- [OFLW] metagenome; faeces
Page 44 : [OFLX] seawater metagenome; seawater --- [OFPS] human gut metagenome; human gut
Page 45 : [OFPT] freshwater metagenome; Freshwater Lake --- [OGCY] metagenome; Human gut stool
Page 46 : [OGCZ] metagenome; Human gut stool --- [OGGU] metagenome; Human gut stool
Page 47 : [OGGV] metagenome; Human gut stool --- [OGKQ] metagenome; Human gut stool
Page 48 : [OGKR] metagenome; Human gut stool --- [OGOM] human gut metagenome; faeces
Page 49 : [OGON] human gut metagenome; faeces --- [OGSJ] human gut metagenome; fecal sample 6 from infant 6
Page 50 : [OGSK] human gut metagenome; fecal sample 2 from infant 5 --- [OGWZ] human gut metagenome; faeces
Page 51 : [OGXA] human gut metagenome; faeces --- [OHAW] human gut metagenome; feces
Page 52 : [OHAX] human gut metagenome; faeces --- [OHES] human gut metagenome; feces
Page 53 : [OHET] human gut metagenome; feces --- [OHIO] human gut metagenome; feces
Page 54 : [OHIP] human gut metagenome; feces --- [OHMM] human gut metagenome; feces
Page 55 : [OHMN] human gut metagenome; faeces --- [OHQI] human gut metagenome; feces
Page 56 : [OHQJ] human gut metagenome; feces --- [OHUE] human gut metagenome; feces
Page 57 : [OHUF] human gut metagenome; feces --- [OHYA] human gut metagenome; feces
Page 58 : [OHYB] human gut metagenome; feces --- [OIBW] human gut metagenome; feces
Page 59 : [OIBX] human gut metagenome; feces --- [OIFT] human gut metagenome; stool
Page 60 : [OIFV] human gut metagenome; stool --- [OIJS] human gut metagenome; human gut
Page 61 : [OIJT] human gut metagenome; human gut --- [OINO] human gut metagenome; human gut
Page 62 : [OINP] human gut metagenome; human gut --- [OIRK] human gut metagenome; human gut
Page 63 : [OIRL] human gut metagenome; human gut --- [OIVM] human gut metagenome; human gut
Page 64 : [OIVO] human gut metagenome; human gut --- [OJCU] seawater metagenome; Sea water
Page 65 : [OJCV] seawater metagenome; Sea water --- [OJGQ] seawater metagenome; Sea water
Page 66 : [OJGR] seawater metagenome; Sea water --- [OJKN] metagenome; surface
Page 67 : [OJKO] metagenome; faeces --- [OJOJ] human gut metagenome; human gut
Page 68 : [OJOK] human gut metagenome; human gut --- [OJSF] human gut metagenome; human gut
Page 69 : [OJSG] human gut metagenome; human gut --- [OJWC] human gut metagenome; human gut
Page 70 : [OJWD] human gut metagenome; human gut --- [OJZY] human gut metagenome; human gut
Page 71 : [OJZZ] human gut metagenome; human gut --- [OKDU] human gut metagenome; human gut
Page 72 : [OKDV] human gut metagenome; human gut --- [OKHQ] human gut metagenome; human gut
Page 73 : [OKHR] human gut metagenome; human gut --- [OKLM] human gut metagenome; human gut
Page 74 : [OKLN] human gut metagenome; human gut --- [OKPI] human gut metagenome; human gut
Page 75 : [OKPJ] human gut metagenome; human gut --- [OKUI] human gut metagenome; feces
Page 76 : [OKUJ] human gut metagenome; feces --- [OKYE] human gut metagenome; human gut
Page 77 : [OKYF] human gut metagenome; human gut --- [OLCB] human gut metagenome; human gut
Page 78 : [OLCC] human gut metagenome; human gut --- [OLFX] human gut metagenome; faeces
Page 79 : [OLFY] human gut metagenome; faeces --- [OLKE] metagenome; surface
Page 80 : [OLKF] human gut metagenome; human gut --- [OLPK] human gut metagenome; faeces
Page 81 : [OLPL] human gut metagenome; faeces --- [OLTG] human gut metagenome; faeces
Page 82 : [OLTH] human gut metagenome; faeces --- [OLXC] human gut metagenome; feces
Page 83 : [OLXD] human gut metagenome; feces --- [OMAY] human gut metagenome; feces
Page 84 : [OMAZ] human gut metagenome; feces --- [OMEU] human gut metagenome; feces
Page 85 : [OMEV] human gut metagenome; feces --- [OOAA] human gut metagenome; human gut
Page 86 : [OOAC] human gut metagenome; human gut --- [OOFS] marine metagenome; sea ice
Page 87 : [OOFT] marine metagenome; sea ice --- [OUMR] metagenome; soil
Page 88 : [OUMS] metagenome; soil --- [PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
Page 89 : [PJUC] soil metagenome; Soil enriched on filter paper --- stromatolite metagenome; viral fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
Page 90 : viral fraction from Arctic Ocean --- viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands)
Page: 90 / 90
Abditibacteriota
Acidithiobacillia
Acidobacteria
Acidobacteriota
Actinobacteria
Actinomycetota
Alphaproteobacteria
Aquificota
Armatimonadota
Atribacterota
Bacillota
Bacteroidota
Balneolota
Bdellovibrionota
Betaproteobacteria
Caldisericota
Calditrichota
Campylobacterota
Chlamydiota
Chlorobiota
Chloroflexi
Chloroflexota
Chrysiogenota
Coprothermobacterota
Cyanobacteriota
Deferribacterota
Deinococcota
Deltaproteobacteria
Dictyoglomota
Elusimicrobiota
Epsilonproteobacteria
Euryarchaeota
Fibrobacterota
Firmicutes
Fusobacteriota
Gammaproteobacteria
Gemmatimonadota
Hydrogenophilia
Ignavibacteriota
Kiritimatiellota
Lentisphaerota
Mycoplasmatota
Myxococcota
Nanoarchaeota
Nitrososphaerota
Nitrospinota
Nitrospirota
Planctomycetota
Rhodothermota
Spirochaetota
Synergistota
Thermodesulfobacteriota
Thermodesulfobiota
Thermomicrobiota
Thermoproteota
Thermotogota
Unclassified
Uroviricota
Verrucomicrobiota
Zetaproteobacteria
viral fraction from Arctic Ocean
0
0
0
0
0
0
20
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
viral fraction from Bay of British Colombia
0
0
0
0
0
0
2
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
viral fraction from Gulf of Mexico
0
0
0
0
0
0
4
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
viral fraction from Sargasso Sea
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
0
0
0
0
0
0
2
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands)
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
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