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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100008 (54 seq.)
>W1711097665
LTIW01000087
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
24001
24085
+
Leu
TAG
[ENA]
¡û
>W1711098017
LTJF01000007
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
178127
178045
-
Leu
TAG
[ENA]
¡û
>W1711098582
LTJR01000032
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
32207
32289
+
Leu
TAG
[ENA]
¡û
>W1711102007
LTNI01000053
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
11923
12005
+
Leu
TAG
[ENA]
¡û
>W1711113442
LTYH01000020
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
60962
60880
-
Leu
TAG
[ENA]
¡û
>W1711114843
LTZQ01000016
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
168151
168069
-
Leu
TAG
[ENA]
¡û
>W1711114961
LTZS01000059
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
85682
85764
+
Leu
TAG
[ENA]
¡û
>W1711186026
LWNW01000026
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
4465
4549
+
Leu
TAG
[ENA]
¡û
>W1711186842
LWON01000064
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
14749
14667
-
Leu
TAG
[ENA]
¡û
>W1711187086
LWOT01000075
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
4085
4003
-
Leu
TAG
[ENA]
¡û
>W1711187646
LWPQ01000030
Actinomycetota
Corynebacterium sp. HMSC27B11 [LWPQ]
10724
10806
+
Leu
TAG
[ENA]
¡û
>W1711187903
LWPW01000082
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
8725
8643
-
Leu
TAG
[ENA]
¡û
>C171001895
CP009245
Actinomycetota
Corynebacterium aquilae DSM 44791 S-613 [CP009245]
2306063
2305979
-
Leu
TAG
-
¡û
>W131159211
AQUW01000001
Actinomycetota
Corynebacterium ciconiae DSM 44920 [AQUW]
625598
625682
+
Leu
TAG
[ENA]
¡û
>WENV180503307
OCAM01011476
[OCAM] human gut metagenome; faeces
965
1049
+
Leu
TAG
[ENA]
¢þ
>WENV180697429
ODDE01000386
[ODDE] human metagenome; G_DNA_Supragingival plaque
13221
13137
-
Leu
TAG
[ENA]
¢þ
>WENV180733346
ODGZ01000002
[ODGZ] human metagenome; G_DNA_Supragingival plaque
229113
229197
+
Leu
TAG
[ENA]
¢þ
>WENV180773778
ODIJ01002117
[ODIJ] human metagenome; G_DNA_Tongue dorsum
96
14
-
Leu
TAG
[ENA]
¢þ
>WENV180805602
ODJH01000060
[ODJH] human metagenome; G_DNA_Tongue dorsum
106176
106258
+
Leu
TAG
[ENA]
¢þ
>WENV180976114
ODUY01047193
[ODUY] human metagenome; G_DNA_Supragingival plaque
158
242
+
Leu
TAG
[ENA]
¢þ
>WENV181066964
ODZI01004073
[ODZI] human metagenome; G_DNA_Supragingival plaque
159
243
+
Leu
TAG
[ENA]
¢þ
>WENV181180705
OEJU01000705
[OEJU] human metagenome; G_DNA_Supragingival plaque
10592
10508
-
Leu
TAG
[ENA]
¢þ
>WENV181326396
OFLL01000277
[OFLL] metagenome; faeces
11790
11708
-
Leu
TAG
[ENA]
¢þ
>C08003925
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
1698473
1698555
+
Leu
TAG
[Ensembl]
¡û
>W141452850
JFCF01000025
Actinomycetota
Corynebacterium jeikeium [JFCF]
108334
108250
-
Leu
TAG
[ENA]
¡û
>W141452980
JFCI01000001
Actinomycetota
Corynebacterium jeikeium [JFCI]
12288
12204
-
Leu
TAG
[ENA]
¡û
>W141453056
JFCJ01000071
Actinomycetota
Corynebacterium jeikeium [JFCJ]
18699
18781
+
Leu
TAG
[ENA]
¡û
>W141453091
JFCK01000228
Actinomycetota
Corynebacterium jeikeium [JFCK]
32626
32710
+
Leu
TAG
[ENA]
¡û
>W141453147
JFCL01000027
Actinomycetota
Corynebacterium jeikeium [JFCL]
181613
181531
-
Leu
TAG
[ENA]
¡û
>W141453218
JFCM01000084
Actinomycetota
Corynebacterium jeikeium [JFCM]
40132
40216
+
Leu
TAG
[ENA]
¡û
>W141453252
JFCN01000048
Actinomycetota
Corynebacterium jeikeium [JFCN]
988
904
-
Leu
TAG
[ENA]
¡û
>W141453279
JFCO01000015
Actinomycetota
Corynebacterium jeikeium [JFCO]
6086
6002
-
Leu
TAG
[ENA]
¡û
>W141453347
JFCP01000022
Actinomycetota
Corynebacterium jeikeium [JFCP]
32626
32710
+
Leu
TAG
[ENA]
¡û
>W141453402
JFCQ01000020
Actinomycetota
Corynebacterium jeikeium [JFCQ]
133514
133430
-
Leu
TAG
[ENA]
¡û
>W141453463
JFCR01000019
Actinomycetota
Corynebacterium jeikeium [JFCR]
129364
129280
-
Leu
TAG
[ENA]
¡û
>C181214775
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
2056680
2056598
-
Leu
TAG
-
¡û
>C181226726
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
1009444
1009526
+
Leu
TAG
-
¡û
>W1910226174
FMTZ01000006
Actinomycetota
Corynebacterium jeikeium [FMTZ]
59847
59929
+
Leu
TAG
[ENA]
¡û
>C141004780
CP006365
Actinomycetota
Corynebacterium argentoratense DSM 44202 [CP006365]
310124
310206
+
Leu
TAG
[Ensembl]
¡û
>W1911498463
OCTS01000007
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
119129
119213
+
Leu
TAG
[ENA]
¡û
>W1911770965
QXJK01000020
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
1343
1259
-
Leu
TAG
[ENA]
¡û
>W1810118380
PHQP01000013
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
30528
30610
+
Leu
TAG
[ENA]
¡û
>W1810623568
QHCV01000014
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
23513
23595
+
Leu
TAG
[ENA]
¡û
>C151013231
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
737534
737618
+
Leu
TAG
-
¡û
>C151017667
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
712464
712548
+
Leu
TAG
[Ensembl]
¡û
>C151039865
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1878479
1878561
+
Leu
TAG
[Ensembl]
¡û
>W10113767
ADGN01000018
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
142459
142377
-
Leu
TAG
[ENA]
¡û
>C11106292
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
526238
526156
-
Leu
TAG
[Ensembl]
¡û
>W11117103
ADGN01000018
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
142459
142377
-
Leu
TAG
[ENA]
¡û
>W1511357128
JRVJ01000019
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
103559
103477
-
Leu
TAG
[ENA]
¡û
>W1511438986
JUNC01000020
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
114768
114852
+
Leu
TAG
[ENA]
¡û
>W1511442777
JUSD01000042
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
28644
28726
+
Leu
TAG
[ENA]
¡û
>W1511459382
JVKJ01000001
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
103204
103288
+
Leu
TAG
[ENA]
¡û
>W1511542044
JZEZ01000033
Actinomycetota
Corynebacterium argentoratense CNM 463/05 [JZEZ]
12288
12206
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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