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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101069 (30 seq.)
>W1710870811
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
102922
103007
+
Leu
TAA
[ENA]
¡û
>W1711082162
LSTR01000017
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
70717
70802
+
Leu
TAA
[ENA]
¡û
>W1711083867
LSVG01000042
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
3084
2999
-
Leu
TAA
[ENA]
¡û
>W1711146781
LVJD01000263
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
37955
37870
-
Leu
TAA
[ENA]
¡û
>W131002976
AGZU01000005
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
340778
340863
+
Leu
TAA
[ENA]
¡û
>W131052378
AMYX01000029
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
20870
20955
+
Leu
TAA
[ENA]
¡û
>WENV181227555
OFDN01017002
[OFDN] hot springs metagenome; Water
25
110
+
Leu
TAA
[ENA]
¢þ
>WENV183729804
PJTR01000089
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
34049
34134
+
Leu
TAA
[ENA]
¢þ
>WENV183730508
PJTS01000080
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
5035
5120
+
Leu
TAA
[ENA]
¢þ
>WENV183732703
PJTX01007034
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1
86
+
Leu
TAA
[ENA]
¢þ
>WENV183732968
PJTY01000009
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
325890
325805
-
Leu
TAA
[ENA]
¢þ
>WENV183734212
PJTZ01000236
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
9808
9723
-
Leu
TAA
[ENA]
¢þ
>WENV183737168
PJUD01000814
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2022
2107
+
Leu
TAA
[ENA]
¢þ
>C181047589
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
4104668
4104753
+
Leu
TAA
-
¡û
>C181089678
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
2967758
2967843
+
Leu
TAA
-
¡û
>W141520465
JGVR01000027
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
37322
37407
+
Leu
TAA
[ENA]
¡û
>C191063668
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
913636
913551
-
Leu
TAA
-
¡û
>C191103913
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
503165
503080
-
Leu
TAA
-
¡û
>C191163713
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
2418706
2418621
-
Leu
TAA
-
¡û
>W141807741
JPOU01000012
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
11512
11597
+
Leu
TAA
[ENA]
¡û
>W1911114831
NOIW01000063
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
26786
26701
-
Leu
TAA
[ENA]
¡û
>W1911688316
QLJK01000032
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
40082
40167
+
Leu
TAA
[ENA]
¡û
>W1911722449
QRAL01000039
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
35438
35523
+
Leu
TAA
[ENA]
¡û
>W1510941348
JFFT01000020
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
45269
45184
-
Leu
TAA
[ENA]
¡û
>W11176433
AFXE01000087
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
4948
5033
+
Leu
TAA
[ENA]
¡û
>W121068947
AJVL01000026
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
4954
5039
+
Leu
TAA
[ENA]
¡û
>W1610733157
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
102922
103007
+
Leu
TAA
[ENA]
¡û
>W1610920947
LSTR01000017
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
70717
70802
+
Leu
TAA
[ENA]
¡û
>W1610922620
LSVG01000042
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
3084
2999
-
Leu
TAA
[ENA]
¡û
>W1710592179
FRCG01000009
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
62126
62041
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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