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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101396 (22 seq.)
>W1711767399
MUZU01000009
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
99667
99583
-
Leu
CAA
[ENA]
¡û
>C171033418
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
3325070
3324986
-
Leu
CAA
-
¡û
>w028542
ABDD01000015
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
130933
130852
-
Leu
CAA
[ENA]
¡û
>w019952
AAUO01000006
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
149356
149270
-
Leu
CAA
[ENA]
¡û
>C08010576
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4901161
4901080
-
Leu
CAA
[Ensembl]
¡û
>WENV182556823
OJDH01000183
[OJDH] seawater metagenome; Sea water
30778
30862
+
Leu
CAA
[ENA]
¢þ
>WENV182560386
OJDU01000294
[OJDU] seawater metagenome; Sea water
10449
10533
+
Leu
CAA
[ENA]
¢þ
>WENV182578943
OJGP01027879
[OJGP] seawater metagenome; Sea water
41
125
+
Leu
CAA
[ENA]
¢þ
>WENV182594484
OJIV01019057
[OJIV] seawater metagenome; Sea water
513
429
-
Leu
CAA
[ENA]
¢þ
>C08010772
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
5044912
5044831
-
Leu
CAA
[Ensembl]
¡û
>WENV183056209
OLHI01001518
[OLHI] seawater metagenome; Sea water
3198
3282
+
Leu
CAA
[ENA]
¢þ
>WENV183064704
OLII01000021
[OLII] seawater metagenome; Sea water
20473
20389
-
Leu
CAA
[ENA]
¢þ
>WENV170025052
BCQL01197356
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
304
388
+
Leu
CAA
[ENA]
¢þ
>WENV170781067
MAAB01029279
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3845
3761
-
Leu
CAA
[ENA]
¢þ
>WENV170783172
MAAC01014691
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
48284
48200
-
Leu
CAA
[ENA]
¢þ
>C181214196
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
4208828
4208744
-
Leu
CAA
-
¡û
>C09109824
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4730278
4730194
-
Leu
CAA
[Ensembl]
¡û
>C10112873
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
4187268
4187184
-
Leu
CAA
[Ensembl]
¡û
>W1511533746
JYNI01000025
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
75753
75669
-
Leu
CAA
[ENA]
¡û
>W1511533802
JYNJ01000004
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
90049
90133
+
Leu
CAA
[ENA]
¡û
>W1610460576
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
713140
713224
+
Leu
CAA
[ENA]
¡û
>W1710460140
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
713140
713224
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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