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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10569 (85 seq.)
>W1710909301
LNQJ01000005
Actinomycetota
Arthrobacter sp. NIO-1057 [LNQJ]
344405
344314
-
Ser
GCT
[ENA]
¡û
>W1710916184
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
441994
441903
-
Ser
GCT
[ENA]
¡û
>W1711096371
LTHR01000074
Actinomycetota
Rothia sp. HMSC075F09 [LTHR]
34180
34271
+
Ser
GCT
[ENA]
¡û
>W1711098326
LTJM01000025
Actinomycetota
Rothia sp. HMSC072B03 [LTJM]
37806
37715
-
Ser
GCT
[ENA]
¡û
>W1711104208
LTPL01000077
Actinomycetota
Rothia sp. HMSC065C03 [LTPL]
88923
88832
-
Ser
GCT
[ENA]
¡û
>W1711105013
LTQJ01000032
Actinomycetota
Rothia sp. HMSC061D12 [LTQJ]
3843
3934
+
Ser
GCT
[ENA]
¡û
>W1711108222
LTTM01000045
Actinomycetota
Rothia sp. HMSC065D09 [LTTM]
83896
83805
-
Ser
GCT
[ENA]
¡û
>W1711113878
LTYQ01000049
Actinomycetota
Rothia sp. HMSC067H10 [LTYQ]
245172
245263
+
Ser
GCT
[ENA]
¡û
>W131210578
ATKN01000023
Actinomycetota
Arthrobacter sp. PAO19 [ATKN]
25074
25165
+
Ser
GCT
[ENA]
¡û
>W1711618499
MPBI01000004
Actinomycetota
Glutamicibacter sp. 0426 [MPBI]
317692
317601
-
Ser
GCT
[ENA]
¡û
>W1711667040
MRDE01000072
Actinomycetota
Tersicoccus phoenicis [MRDE]
77797
77706
-
Ser
GCT
[ENA]
¡û
>W131099037
AOSQ01000002
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
56837
56748
-
Ser
GCT
[ENA]
¡û
>WENV180007600
FLSA01109719
[FLSA] metagenome; saliva
3961
3870
-
Ser
GCT
[ENA]
¢þ
>WENV180007603
FLSA01113117
[FLSA] metagenome; saliva
2688
2597
-
Ser
GCT
[ENA]
¢þ
>WENV180153203
OAUR01007653
[OAUR] human gut metagenome; faeces
132
41
-
Ser
GCT
[ENA]
¢þ
>WENV180178306
OAWH01001676
[OAWH] human gut metagenome; faeces
444
353
-
Ser
GCT
[ENA]
¢þ
>WENV180439967
OBWU01000287
[OBWU] human gut metagenome; faeces
10107
10198
+
Ser
GCT
[ENA]
¢þ
>WENV180459920
OBXY01000230
[OBXY] human gut metagenome; faeces
10057
9966
-
Ser
GCT
[ENA]
¢þ
>WENV180551554
OCJG01000758
[OCJG] human oral metagenome; human oral
1046
1137
+
Ser
GCT
[ENA]
¢þ
>WENV180559540
OCKC01003517
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
75
166
+
Ser
GCT
[ENA]
¢þ
>WENV180697913
ODDE01010477
[ODDE] human metagenome; G_DNA_Supragingival plaque
1480
1571
+
Ser
GCT
[ENA]
¢þ
>WENV180717446
ODGE01000006
[ODGE] human metagenome; G_DNA_Buccal mucosa
219780
219689
-
Ser
GCT
[ENA]
¢þ
>WENV180717783
ODGE01002291
[ODGE] human metagenome; G_DNA_Buccal mucosa
260
349
+
Ser
GCT
[ENA]
¢þ
>WENV180718924
ODGI01004658
[ODGI] human metagenome; G_DNA_Buccal mucosa
262
353
+
Ser
GCT
[ENA]
¢þ
>WENV180733712
ODGZ01000566
[ODGZ] human metagenome; G_DNA_Supragingival plaque
18435
18346
-
Ser
GCT
[ENA]
¢þ
>WENV180733824
ODGZ01000900
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5166
5257
+
Ser
GCT
[ENA]
¢þ
>WENV180773887
ODIJ01003759
[ODIJ] human metagenome; G_DNA_Tongue dorsum
3810
3719
-
Ser
GCT
[ENA]
¢þ
>WENV180782650
ODIQ01000092
[ODIQ] human metagenome; G_DNA_Tongue dorsum
45126
45035
-
Ser
GCT
[ENA]
¢þ
>WENV180820389
ODJR01005925
[ODJR] human metagenome; G_DNA_Tongue dorsum
2984
2893
-
Ser
GCT
[ENA]
¢þ
>WENV180831068
ODKB01034827
[ODKB] human metagenome; G_DNA_Tongue dorsum
48
139
+
Ser
GCT
[ENA]
¢þ
>WENV180842138
ODKM01000422
[ODKM] human metagenome; G_DNA_Buccal mucosa
2189
2280
+
Ser
GCT
[ENA]
¢þ
>WENV180852794
ODKW01006317
[ODKW] human metagenome; G_DNA_Tongue dorsum
160
69
-
Ser
GCT
[ENA]
¢þ
>WENV180857802
ODLC01000045
[ODLC] human metagenome; G_DNA_Tongue dorsum
29083
28992
-
Ser
GCT
[ENA]
¢þ
>WENV180896290
ODNI01000276
[ODNI] human metagenome; G_DNA_Tongue dorsum
20872
20781
-
Ser
GCT
[ENA]
¢þ
>WENV180901568
ODOK01000589
[ODOK] human metagenome; G_DNA_Tongue dorsum
10466
10375
-
Ser
GCT
[ENA]
¢þ
>WENV180928861
ODTN01000063
[ODTN] human metagenome; G_DNA_Tongue dorsum
48360
48451
+
Ser
GCT
[ENA]
¢þ
>WENV180945799
ODUD01000072
[ODUD] human metagenome; G_DNA_Tongue dorsum
9086
9177
+
Ser
GCT
[ENA]
¢þ
>WENV180975933
ODUY01031747
[ODUY] human metagenome; G_DNA_Supragingival plaque
418
327
-
Ser
GCT
[ENA]
¢þ
>WENV180986922
ODVK01002082
[ODVK] human metagenome; G_DNA_Supragingival plaque
1982
2071
+
Ser
GCT
[ENA]
¢þ
>WENV181006183
ODWA01003409
[ODWA] human metagenome; G_DNA_Buccal mucosa
1556
1647
+
Ser
GCT
[ENA]
¢þ
>WENV181027579
ODXD01011595
[ODXD] human metagenome; G_DNA_Buccal mucosa
963
1054
+
Ser
GCT
[ENA]
¢þ
>WENV181058485
ODYL01013825
[ODYL] human metagenome; G_DNA_Tongue dorsum
102
11
-
Ser
GCT
[ENA]
¢þ
>WENV181068333
ODZI01277120
[ODZI] human metagenome; G_DNA_Supragingival plaque
2
93
+
Ser
GCT
[ENA]
¢þ
>WENV181073724
OEAO01000843
[OEAO] human metagenome; G_DNA_Tongue dorsum
22002
21911
-
Ser
GCT
[ENA]
¢þ
>WENV181078213
OEAQ01030345
[OEAQ] human metagenome; G_DNA_Buccal mucosa
112
23
-
Ser
GCT
[ENA]
¢þ
>W141106096
AVPD01000046
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
14510
14601
+
Ser
GCT
[ENA]
¡û
>WENV181085164
OEAX01002203
[OEAX] human metagenome; G_DNA_Tongue dorsum
5464
5373
-
Ser
GCT
[ENA]
¢þ
>WENV181113024
OEEL01009130
[OEEL] human metagenome; G_DNA_Tongue dorsum
48
139
+
Ser
GCT
[ENA]
¢þ
>WENV181135066
OEGG01002386
[OEGG] human metagenome; G_DNA_Tongue dorsum
4740
4831
+
Ser
GCT
[ENA]
¢þ
>WENV181158716
OEIH01007031
[OEIH] human metagenome; G_DNA_Supragingival plaque
2104
2015
-
Ser
GCT
[ENA]
¢þ
>WENV181176044
OEJQ01138359
[OEJQ] human metagenome; G_DNA_Tongue dorsum
102
11
-
Ser
GCT
[ENA]
¢þ
>WENV181180976
OEJU01002713
[OEJU] human metagenome; G_DNA_Supragingival plaque
4779
4688
-
Ser
GCT
[ENA]
¢þ
>WENV181634932
OGMW01049734
[OGMW] metagenome; Human gut stool
394
485
+
Ser
GCT
[ENA]
¢þ
>WENV182539738
OIXV01014741
[OIXV] human gut metagenome; faeces
1226
1317
+
Ser
GCT
[ENA]
¢þ
>WENV182943735
OKVI01000572
[OKVI] human gut metagenome; human gut
14826
14735
-
Ser
GCT
[ENA]
¢þ
>WENV183508310
OMHC01002125
[OMHC] human oral metagenome; human oral
1012
1101
+
Ser
GCT
[ENA]
¢þ
>WENV183790540
PPYF01411962
[PPYF] human gut metagenome; stool from patient with Crohn's disease
108
17
-
Ser
GCT
[ENA]
¢þ
>WENV170590362
FUFK010717342
[FUFK] metagenome; unknown
29794
29703
-
Ser
GCT
[ENA]
¢þ
>C181083173
CP023510
Actinomycetota
Rothia mucilaginosa FDAARGOS_369 [CP023510]
1548295
1548204
-
Ser
GCT
-
¡û
>C191100411
CP033081
Actinomycetota
Glutamicibacter nicotianae OTC-16 [CP033081]
571395
571304
-
Ser
GCT
-
¡û
>C191124737
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
430026
429935
-
Ser
GCT
-
¡û
>W1910182817
BJNE01000022
Actinomycetota
Glutamicibacter nicotianae NBRC 14234 [BJNE]
13006
12915
-
Ser
GCT
[ENA]
¡û
>W1910183720
BJNY01000027
Actinomycetota
Glutamicibacter uratoxydans NBRC 15515 [BJNY]
92
2
-
Ser
GCT
[ENA]
¡û
>W1911567816
PCPV01000018
Actinomycetota
Arthrobacter sp. MYb222 [PCPV]
26134
26225
+
Ser
GCT
[ENA]
¡û
>W1911568055
PCPZ01000005
Actinomycetota
Arthrobacter sp. MYb214 [PCPZ]
244325
244234
-
Ser
GCT
[ENA]
¡û
>W1911597791
PNQX01000002
Actinomycetota
Glutamicibacter arilaitensis JB182 [PNQX]
208941
209030
+
Ser
GCT
[ENA]
¡û
>W1810089804
PGEY01000001
Actinomycetota
Glutamicibacter mysorens DSM 12798 [PGEY]
3414157
3414066
-
Ser
GCT
[ENA]
¡û
>W1810201534
POAF01000006
Actinomycetota
Glutamicibacter soli NHPC-3 [POAF]
314321
314230
-
Ser
GCT
[ENA]
¡û
>C151092374
CP012171
Actinomycetota
Arthrobacter sp. LS16 [CP012171]
501048
500957
-
Ser
GCT
-
¡û
>C11100121
FQ311875
Actinomycetota
Glutamicibacter arilaitensis Re117 [FQ311875]
551704
551613
-
Ser
GCT
[Ensembl]
¡û
>W1511387235
JSUH01000006
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
187181
187270
+
Ser
GCT
[ENA]
¡û
>W1511459378
JVKI01000027
Actinomycetota
Leifsonia xyli 356_LXYL [JVKI]
188492
188583
+
Ser
GCT
[ENA]
¡û
>W1511471187
JVXR01000003
Actinomycetota
Rothia dentocariosa 1234_RDEN [JVXR]
47902
47993
+
Ser
GCT
[ENA]
¡û
>W1511483968
JWMD01000030
Actinomycetota
Arthrobacter sp. W1 [JWMD]
12217
12126
-
Ser
GCT
[ENA]
¡û
>W1511624301
LCYH01000011
Actinomycetota
Arthrobacter sp. YC-RL1 [LCYH]
52284
52375
+
Ser
GCT
[ENA]
¡û
>C161045477
CP012750
Actinomycetota
Glutamicibacter halophytocola KLBMP 5180 [CP012750]
578418
578327
-
Ser
GCT
[Ensembl]
¡û
>C161055114
CP013297
Actinomycetota
Arthrobacter sp. YC-RL1 [CP013297]
3418844
3418935
+
Ser
GCT
[Ensembl]
¡û
>W1610041868
BAXF01000069
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
3613
3522
-
Ser
GCT
[ENA]
¡û
>W1610067429
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
299264
299173
-
Ser
GCT
[ENA]
¡û
>W1610515085
FMAT01000004
Actinomycetota
Arthrobacter sp. NIO-1057 [FMAT]
344405
344314
-
Ser
GCT
[ENA]
¡û
>W1610767660
LNQJ01000005
Actinomycetota
Arthrobacter sp. NIO-1057 [LNQJ]
344405
344314
-
Ser
GCT
[ENA]
¡û
>W1610774423
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
441994
441903
-
Ser
GCT
[ENA]
¡û
>W1710038962
BAXF01000069
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
3613
3522
-
Ser
GCT
[ENA]
¡û
>W1710064802
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
299264
299173
-
Ser
GCT
[ENA]
¡û
>W1710500775
FMAT01000004
Actinomycetota
Arthrobacter sp. NIO-1057 [FMAT]
344405
344314
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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