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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106948 (36 seq.)
>W1710870481
LMKN01000009
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
145715
145799
+
Leu
CAA
[ENA]
¡û
>W1710870755
LMKT01000024
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
206913
206997
+
Leu
CAA
[ENA]
¡û
>W1710871043
LMKZ01000002
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
387863
387779
-
Leu
CAA
[ENA]
¡û
>W1711407999
MGLN01000073
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
8304
8220
-
Leu
CAA
[ENA]
¡û
>WENV170121436
CENM01019712
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
438
522
+
Leu
CAA
[ENA]
¡û
>WENV170136721
CENV01065600
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2793
2877
+
Leu
CAA
[ENA]
¡û
>WENV170784092
MCHG01000012
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
19090
19006
-
Leu
CAA
[ENA]
¡û
>W141801039
JPDP01000555
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
6385
6469
+
Leu
CAA
[ENA]
¡û
>W141805159
JPJC01000024
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
4305
4221
-
Leu
CAA
[ENA]
¡û
>W1810463431
PZZN01000003
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
209218
209302
+
Leu
CAA
[ENA]
¡û
>SRA1014754
SRR023845.300572
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
222
138
-
Leu
CAA
[SRA]
>SRA1015650
SRR023846.146038
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
41
-
Leu
CAA
[SRA]
>SRA1016014
SRR023846.312408
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
123
+
Leu
CAA
[SRA]
>W2010311776
CABWMY010000001
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
345383
345467
+
Leu
CAA
[ENA]
¡û
>W2010533975
JAAOYQ010000005
Alphaproteobacteria
Sphingomonas aerolata AS2.4 [JAAOYQ]
208211
208295
+
Leu
CAA
[ENA]
¡û
>W2010633657
JABTYI010000028
Alphaproteobacteria
Brevundimonas vesicularis USM1 [JABTYI]
13264
13180
-
Leu
CAA
[ENA]
¡û
>W2010658355
JACARP010000102
Alphaproteobacteria
Brevundimonas sp. P7753 [JACARP]
17423
17507
+
Leu
CAA
[ENA]
¡û
>W2010720848
JACIAP010000002
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
244159
244075
-
Leu
CAA
[ENA]
¡û
>W2110276117
JACVVX010000002
Alphaproteobacteria
Oryzicola mucosus Rool2 [JACVVX]
12115
12199
+
Leu
CAA
[ENA]
¡û
>W2110290247
JACYTY010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
207953
208037
+
Leu
CAA
[ENA]
¡û
>W2110290287
JACYTZ010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
348273
348189
-
Leu
CAA
[ENA]
¡û
>W2110290844
JACYUP010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13733 CFBP13733 [JACYUP]
795680
795596
-
Leu
CAA
[ENA]
¡û
>W2110291608
JACYVG010000003
Alphaproteobacteria
Sphingomonas sp. CFBP 13714 CFBP13714 [JACYVG]
344530
344446
-
Leu
CAA
[ENA]
¡û
>W2110291789
JACYVM010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
569619
569535
-
Leu
CAA
[ENA]
¡û
>W2110554393
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
826767
826683
-
Leu
CAA
[ENA]
¡û
>C201258594
CP053086
Alphaproteobacteria
Pelagibacterium halotolerans ANSP101 [CP053086]
416062
415978
-
Leu
CAA
-
¡û
>C211156524
CP062006
Alphaproteobacteria
Brevundimonas pondensis LVF1 [CP062006]
275085
275001
-
Leu
CAA
-
¡û
>C231406204
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
2560644
2560560
-
Leu
CAA
-
¡û
>C231518529
CP107716
Alphaproteobacteria
Pelagibacterium sp. YIM 151497 [CP107716]
568962
568878
-
Leu
CAA
-
¡û
>C241353456
CP139996
Alphaproteobacteria
Brevundimonas bullata HAMBI_0262 [CP139996]
2698409
2698493
+
Leu
CAA
-
¡û
>W1511357041
JRVI01000010
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
5562
5478
-
Leu
CAA
[ENA]
¡û
>C121005235
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
2979466
2979550
+
Leu
CAA
[Ensembl]
¡û
>W1610732827
LMKN01000009
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
145715
145799
+
Leu
CAA
[ENA]
¡û
>W1610733101
LMKT01000024
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
206913
206997
+
Leu
CAA
[ENA]
¡û
>W1610733389
LMKZ01000002
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
387863
387779
-
Leu
CAA
[ENA]
¡û
>W1710533689
FNRH01000016
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
28985
29069
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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