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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10707 (23 seq.)
>W1711434435
MIMZ01000018
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
4131
4222
+
Ser
GCT
[ENA]
¡û
>C171101765
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
900651
900742
+
Ser
GCT
-
¡û
>WENV180149201
OAUK01028835
[OAUK] human gut metagenome; faeces
75
166
+
Ser
GCT
[ENA]
¢þ
>WENV180176648
OAWD01000457
[OAWD] human gut metagenome; faeces
23994
23903
-
Ser
GCT
[ENA]
¢þ
>WENV180498576
OCAG01000522
[OCAG] human gut metagenome; faeces
3700
3791
+
Ser
GCT
[ENA]
¢þ
>WENV180504330
OCAN01001560
[OCAN] human gut metagenome; faeces
3986
4077
+
Ser
GCT
[ENA]
¢þ
>WENV181346188
OFML01006260
[OFML] human gut metagenome; human gut
3182
3273
+
Ser
GCT
[ENA]
¢þ
>W141150090
AXAC01000030
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56567
56658
+
Ser
GCT
[ENA]
¡û
>WENV182403338
OIET01003030
[OIET] human gut metagenome; human gut
616
525
-
Ser
GCT
[ENA]
¢þ
>WENV182836548
OKFX01004095
[OKFX] human gut metagenome; human gut
370
279
-
Ser
GCT
[ENA]
¢þ
>WENV170720466
LSQX01153731
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
43729
43638
-
Ser
GCT
[ENA]
¢þ
>C191064439
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
2576818
2576727
-
Ser
GCT
-
¡û
>C191219522
LR215983
Bacillota
Eubacterium limosum [LR215983]
3889007
3888916
-
Ser
GCT
-
¡û
>W1810609773
QGUD01000018
Bacillota
Eubacterium limosum 8486cho [QGUD]
13974
13883
-
Ser
GCT
[ENA]
¡û
>W1810871701
QUDF01000001
Bacillota
Eubacterium sp. AM05-23 [QUDF]
4032
4123
+
Ser
GCT
[ENA]
¡û
>C11108797
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
188215
188306
+
Ser
GCT
[Ensembl]
¡û
>W1511480182
JWIS01000019
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
13925
13834
-
Ser
GCT
[ENA]
¡û
>C121003890
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
737793
737884
+
Ser
GCT
[Ensembl]
¡û
>C161037775
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
207688
207779
+
Ser
GCT
[Ensembl]
¡û
>W1710525054
FNJF01000029
Bacillota
Eubacterium maltosivorans limosum [FNJF]
33845
33754
-
Ser
GCT
[ENA]
¡û
>W1710530534
FNOU01000038
Bacillota
Eubacterium barkeri [FNOU]
10015
10106
+
Ser
GCT
[ENA]
¡û
>W1710571982
FOWI01000007
Bacillota
Eubacterium callanderi [FOWI]
361121
361030
-
Ser
GCT
[ENA]
¡û
>W1710591303
FRBP01000010
Bacillota
Eubacterium callanderi [FRBP]
195931
195840
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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