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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107535 (118 seq.)
>W1710852881
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
165676
165592
-
Tyr
GTA
[ENA]
¡û
>W1710852882
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
115386
115302
-
Tyr
GTA
[ENA]
¡û
>W1710852922
LLWE01000018
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
3343
3427
+
Tyr
GTA
[ENA]
¡û
>W1710852952
LLWE01000025
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
17247
17163
-
Tyr
GTA
[ENA]
¡û
>W1710859309
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
67590
67506
-
Tyr
GTA
[ENA]
¡û
>W1710859399
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
216432
216348
-
Tyr
GTA
[ENA]
¡û
>W1710859400
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
140044
139960
-
Tyr
GTA
[ENA]
¡û
>W1710859454
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
197706
197622
-
Tyr
GTA
[ENA]
¡û
>W1710859455
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
140275
140191
-
Tyr
GTA
[ENA]
¡û
>W1710859578
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1710859583
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1710859638
LMCG01000077
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
63632
63548
-
Tyr
GTA
[ENA]
¡û
>W1710859643
LMCG01000079
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
50294
50210
-
Tyr
GTA
[ENA]
¡û
>W1710859698
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1710859699
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1710859738
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
16771
16855
+
Tyr
GTA
[ENA]
¡û
>W1710859739
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
77064
77148
+
Tyr
GTA
[ENA]
¡û
>W1710859816
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
76751
76667
-
Tyr
GTA
[ENA]
¡û
>W1710859817
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
19264
19180
-
Tyr
GTA
[ENA]
¡û
>W1710859864
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
56401
56317
-
Tyr
GTA
[ENA]
¡û
>W1710859867
LMCK01000103
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
2722
2806
+
Tyr
GTA
[ENA]
¡û
>W1710864408
LMFV01000062
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
176790
176874
+
Tyr
GTA
[ENA]
¡û
>W1711167006
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
44315
44231
-
Tyr
GTA
[ENA]
¡û
>W1711167007
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
1089
1005
-
Tyr
GTA
[ENA]
¡û
>W1711353662
MDET01000006
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
5582
5498
-
Tyr
GTA
[ENA]
¡û
>W1711424962
MIEL01000015
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
637
553
-
Tyr
GTA
[ENA]
¡û
>W1711424984
MIEL01000038
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
54172
54088
-
Tyr
GTA
[ENA]
¡û
>W1711501786
MKRZ01000204
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
1086
1002
-
Tyr
GTA
[ENA]
¡û
>W1711613476
MOYL01000003
Alphaproteobacteria
Pseudochrobactrum sp. B5 [MOYL]
413837
413921
+
Tyr
GTA
[ENA]
¡û
>W131229309
AUGS01000001
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
487147
487231
+
Tyr
GTA
[ENA]
¡û
>W131229310
AUGS01000001
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
530373
530457
+
Tyr
GTA
[ENA]
¡û
>W141053244
ANNO01000245
Alphaproteobacteria
Pseudochrobactrum sp. AO18b [ANNO]
2885
2969
+
Tyr
GTA
[ENA]
¡û
>WENV183093026
OLLQ01000821
[OLLQ] soil metagenome; soil
1999
2083
+
Tyr
GTA
[ENA]
¡û
>WENV170014600
AYRH01031973
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
86
2
-
Tyr
GTA
[ENA]
¡û
>W09112041
ABXL01000046
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
429071
429155
+
Tyr
GTA
[ENA]
¡û
>W09112042
ABXL01000046
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
493284
493368
+
Tyr
GTA
[ENA]
¡û
>W1910989662
NKQT01000001
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
204752
204668
-
Tyr
GTA
[ENA]
¡û
>W1910989663
NKQT01000001
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
125248
125164
-
Tyr
GTA
[ENA]
¡û
>W1810346536
PVBR01000015
Alphaproteobacteria
Phyllobacterium phragmitis 1N-3 [PVBR]
114161
114245
+
Tyr
GTA
[ENA]
¡û
>W1810672157
QJTF01000028
Alphaproteobacteria
Phyllobacterium leguminum ORS 1419 [QJTF]
34380
34464
+
Tyr
GTA
[ENA]
¡û
>W1810720463
QNRH01000004
Alphaproteobacteria
Pseudochrobactrum asaccharolyticum DSM 25619 [QNRH]
461188
461272
+
Tyr
GTA
[ENA]
¡û
>W2010395446
FREX01000002
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
637386
637470
+
Tyr
GTA
[ENA]
¡û
>W2010395447
FREX01000002
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
723849
723933
+
Tyr
GTA
[ENA]
¡û
>W2010612757
JABRXF010000001
Alphaproteobacteria
Rhizobiales bacterium SY4-7 [JABRXF]
2433857
2433941
+
Tyr
GTA
[ENA]
¡û
>W2010703844
JACHIL010000004
Alphaproteobacteria
Pseudochrobactrum saccharolyticum DSM 25620 [JACHIL]
666
582
-
Tyr
GTA
[ENA]
¡û
>W2010994689
NKQT01000001
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
204752
204668
-
Tyr
GTA
[ENA]
¡û
>W2010994690
NKQT01000001
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
125248
125164
-
Tyr
GTA
[ENA]
¡û
>W2011169224
OMPG01000022
Alphaproteobacteria
Pseudovibrio sp. AU243 [OMPG]
217574
217490
-
Tyr
GTA
[ENA]
¡û
>W2011169225
OMPG01000022
Alphaproteobacteria
Pseudovibrio sp. AU243 [OMPG]
142643
142559
-
Tyr
GTA
[ENA]
¡û
>W2011773439
UBPY01000039
Alphaproteobacteria
Rhizobiales bacterium [UBPY]
92509
92593
+
Tyr
GTA
[ENA]
¡û
>W2011785024
UCAG01000001
Alphaproteobacteria
Rhizobiales bacterium [UCAG]
418
334
-
Tyr
GTA
[ENA]
¡û
>W2011787127
UCCC01000009
Alphaproteobacteria
Rhizobiales bacterium [UCCC]
414
330
-
Tyr
GTA
[ENA]
¡û
>W2011787266
UCCF01000061
Alphaproteobacteria
Rhizobiales bacterium [UCCF]
1575
1491
-
Tyr
GTA
[ENA]
¡û
>W2012218793
VZPG01000004
Alphaproteobacteria
Pseudochrobactrum saccharolyticum CCUG 33852 [VZPG]
396422
396506
+
Tyr
GTA
[ENA]
¡û
>W2012226970
WAJT01000001
Alphaproteobacteria
Labrenzia sp. CE80 [WAJT]
680312
680396
+
Tyr
GTA
[ENA]
¡û
>W2012445227
WUMV01000002
Alphaproteobacteria
Stappia sp. GBMRC 2046 [WUMV]
105166
105250
+
Tyr
GTA
[ENA]
¡û
>W2110047310
BMXE01000003
Alphaproteobacteria
Pseudovibrio japonicus KCTC 12861 [BMXE]
605355
605439
+
Tyr
GTA
[ENA]
¡û
>W2110047345
BMXE01000015
Alphaproteobacteria
Pseudovibrio japonicus KCTC 12861 [BMXE]
1002
918
-
Tyr
GTA
[ENA]
¡û
>W2110120869
CAJQZD010000003
Alphaproteobacteria
Pseudochrobactrum sp. SL-2021 [CAJQZD]
1978947
1978863
-
Tyr
GTA
[ENA]
¡û
>W2110120931
CAJQZE010000004
Alphaproteobacteria
Pseudochrobactrum sp. SL-2021 [CAJQZE]
1978978
1978894
-
Tyr
GTA
[ENA]
¡û
>W2110120991
CAJQZF010000002
Alphaproteobacteria
Pseudochrobactrum sp. SL-2021 [CAJQZF]
1978951
1978867
-
Tyr
GTA
[ENA]
¡û
>W2110156645
JAAPAZ010000002
Alphaproteobacteria
Ochrobactrum sp. MR34 [JAAPAZ]
293043
293127
+
Tyr
GTA
[ENA]
¡û
>W2110156680
JAAPBA010000001
Alphaproteobacteria
Ochrobactrum sp. MR28 [JAAPBA]
322051
322135
+
Tyr
GTA
[ENA]
¡û
>W2110156766
JAAPBB010000012
Alphaproteobacteria
Ochrobactrum sp. SFR4 [JAAPBB]
54405
54321
-
Tyr
GTA
[ENA]
¡û
>W2110156800
JAAPBC010000005
Alphaproteobacteria
Ochrobactrum sp. GRS2 [JAAPBC]
117805
117889
+
Tyr
GTA
[ENA]
¡û
>W2110156825
JAAPBD010000001
Alphaproteobacteria
Ochrobactrum sp. MR31 [JAAPBD]
222536
222620
+
Tyr
GTA
[ENA]
¡û
>W2110292794
JACYXJ010000003
Alphaproteobacteria
Roseibium polysiphoniae KACC 19711 [JACYXJ]
702874
702958
+
Tyr
GTA
[ENA]
¡û
>W2110511684
JAFLNF010000002
Alphaproteobacteria
Roseibium sp. CAU 1637 [JAFLNF]
635886
635802
-
Tyr
GTA
[ENA]
¡û
>C211336775
CP075349
Alphaproteobacteria
Pseudochrobactrum sp. C150915_17 [CP075349]
1978951
1978867
-
Tyr
GTA
-
¡û
>C211336833
CP075355
Alphaproteobacteria
Pseudochrobactrum sp. C150915_16 [CP075355]
1978947
1978863
-
Tyr
GTA
-
¡û
>C211336891
CP075361
Alphaproteobacteria
Pseudochrobactrum sp. C130915_07 [CP075361]
1978978
1978894
-
Tyr
GTA
-
¡û
>C211379426
CP080493
Alphaproteobacteria
Pseudochrobactrum sp. Wa41.01b-1 [CP080493]
878235
878151
-
Tyr
GTA
-
¡û
>C211408176
CP084392
Alphaproteobacteria
Pseudochrobactrum sp. XF203 [CP084392]
2029935
2029851
-
Tyr
GTA
-
¡û
>W2110761398
QTKU01000001
Alphaproteobacteria
Roseibium polysiphoniae AESS21 [QTKU]
1598294
1598210
-
Tyr
GTA
[ENA]
¡û
>W11135884
AEFL01000082
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
63005
63089
+
Tyr
GTA
[ENA]
¡û
>C121006695
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
4304612
4304528
-
Tyr
GTA
[Ensembl]
¡û
>C121006696
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
4223719
4223635
-
Tyr
GTA
[Ensembl]
¡û
>W1610042597
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
34921
35005
+
Tyr
GTA
[ENA]
¡û
>W1610042598
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
59946
60030
+
Tyr
GTA
[ENA]
¡û
>W1610042851
BAZK01000002
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
297399
297483
+
Tyr
GTA
[ENA]
¡û
>W1610042889
BAZK01000049
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
447
363
-
Tyr
GTA
[ENA]
¡û
>W1610585592
LCWX01000122
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
49261
49177
-
Tyr
GTA
[ENA]
¡û
>W1610585601
LCWX01000148
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
9624
9708
+
Tyr
GTA
[ENA]
¡û
>W1610716020
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
165676
165592
-
Tyr
GTA
[ENA]
¡û
>W1610716021
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
115386
115302
-
Tyr
GTA
[ENA]
¡û
>W1610716061
LLWE01000018
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
3343
3427
+
Tyr
GTA
[ENA]
¡û
>W1610716091
LLWE01000025
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
17247
17163
-
Tyr
GTA
[ENA]
¡û
>W1610721655
LMCB01000004
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
67590
67506
-
Tyr
GTA
[ENA]
¡û
>W1610721745
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
216432
216348
-
Tyr
GTA
[ENA]
¡û
>W1610721746
LMCC01000017
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
140044
139960
-
Tyr
GTA
[ENA]
¡û
>W1610721800
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
197706
197622
-
Tyr
GTA
[ENA]
¡û
>W1610721801
LMCD01000022
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
140275
140191
-
Tyr
GTA
[ENA]
¡û
>W1610721862
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
142522
142438
-
Tyr
GTA
[ENA]
¡û
>W1610721867
LMCE01000095
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
103909
103825
-
Tyr
GTA
[ENA]
¡û
>W1610721924
LMCF01000212
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
51897
51813
-
Tyr
GTA
[ENA]
¡û
>W1610721929
LMCF01000215
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
24242
24158
-
Tyr
GTA
[ENA]
¡û
>W1610721984
LMCG01000077
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
63632
63548
-
Tyr
GTA
[ENA]
¡û
>W1610721989
LMCG01000079
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
50294
50210
-
Tyr
GTA
[ENA]
¡û
>W1610722044
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
123112
123028
-
Tyr
GTA
[ENA]
¡û
>W1610722045
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
63631
63547
-
Tyr
GTA
[ENA]
¡û
>W1610722084
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
16771
16855
+
Tyr
GTA
[ENA]
¡û
>W1610722085
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
77064
77148
+
Tyr
GTA
[ENA]
¡û
>W1610722162
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
76751
76667
-
Tyr
GTA
[ENA]
¡û
>W1610722163
LMCJ01000053
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
19264
19180
-
Tyr
GTA
[ENA]
¡û
>W1610722210
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
56401
56317
-
Tyr
GTA
[ENA]
¡û
>W1610722213
LMCK01000103
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
2722
2806
+
Tyr
GTA
[ENA]
¡û
>W1610726754
LMFV01000062
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
176790
176874
+
Tyr
GTA
[ENA]
¡û
>W1710039691
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
34921
35005
+
Tyr
GTA
[ENA]
¡û
>W1710039692
BAXV01000020
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
59946
60030
+
Tyr
GTA
[ENA]
¡û
>W1710040011
BAZK01000002
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
297399
297483
+
Tyr
GTA
[ENA]
¡û
>W1710040049
BAZK01000049
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
447
363
-
Tyr
GTA
[ENA]
¡û
>W1710550701
FOFM01000005
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
87026
86942
-
Tyr
GTA
[ENA]
¡û
>W1710567044
FOSK01000009
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
200173
200257
+
Tyr
GTA
[ENA]
¡û
>W1710567059
FOSK01000026
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
18785
18869
+
Tyr
GTA
[ENA]
¡û
>W1710577866
FPBD01000002
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
657523
657607
+
Tyr
GTA
[ENA]
¡û
>W1710577867
FPBD01000002
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
756033
756117
+
Tyr
GTA
[ENA]
¡û
>W1710704783
LCWX01000122
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
49261
49177
-
Tyr
GTA
[ENA]
¡û
>W1710704792
LCWX01000148
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
9624
9708
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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