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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107660 (65 seq.)
>W1710868102
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1098636
1098720
+
Leu
CAA
[ENA]
¡û
>W1710870169
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
279769
279685
-
Leu
CAA
[ENA]
¡û
>W1710870885
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
140556
140640
+
Leu
CAA
[ENA]
¡û
>W1710870949
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
3482
3566
+
Leu
CAA
[ENA]
¡û
>W1710871152
LMLB01000017
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
434389
434473
+
Leu
CAA
[ENA]
¡û
>W1710871188
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
403107
403191
+
Leu
CAA
[ENA]
¡û
>W1710871210
LMLD01000008
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
245894
245810
-
Leu
CAA
[ENA]
¡û
>W1710872310
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
616905
616989
+
Leu
CAA
[ENA]
¡û
>W1710876462
LMPG01000002
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
989
905
-
Leu
CAA
[ENA]
¡û
>W1710877224
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
376305
376221
-
Leu
CAA
[ENA]
¡û
>W131237444
AUOL01000190
Alphaproteobacteria
Sphingomonas sp. JGI 0001003-D23 [AUOL]
43217
43133
-
Leu
CAA
[ENA]
¡û
>WENV183732781
PJTX01013549
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
686
602
-
Leu
CAA
[ENA]
¡û
>WENV183733780
PJTY01024128
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
12
96
+
Leu
CAA
[ENA]
¡û
>WENV183733890
PJTZ01000001
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
860210
860294
+
Leu
CAA
[ENA]
¡û
>WENV183737842
PJUD01039014
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
745
661
-
Leu
CAA
[ENA]
¡û
>WENV183741148
PJUF01047954
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
278
194
-
Leu
CAA
[ENA]
¡û
>WENV183743705
PJUJ01026430
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
405
321
-
Leu
CAA
[ENA]
¡û
>WENV183744308
PJUK01006362
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
521
437
-
Leu
CAA
[ENA]
¡û
>WENV183744881
PJUL01000521
[PJUL] feces metagenome; Chicken feces enriched on filter paper
11296
11380
+
Leu
CAA
[ENA]
¡û
>C191163743
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1637564
1637648
+
Leu
CAA
-
¡û
>W141779861
JOOE01000002
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
533915
533831
-
Leu
CAA
[ENA]
¡û
>W1810476690
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
588725
588809
+
Leu
CAA
[ENA]
¡û
>W1810476751
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
314177
314261
+
Leu
CAA
[ENA]
¡û
>W1810486876
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
782444
782528
+
Leu
CAA
[ENA]
¡û
>SRA1014107
SRR023845.2023
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
196
112
-
Leu
CAA
[SRA]
>SRA1014133
SRR023845.12934
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
234
+
Leu
CAA
[SRA]
>SRA1014659
SRR023845.248215
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
191
+
Leu
CAA
[SRA]
>SRA1015359
SRR023846.29998
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
43
127
+
Leu
CAA
[SRA]
>SRA1016414
SRR023846.487515
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
126
210
+
Leu
CAA
[SRA]
>SRA1016439
SRR023846.498139
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
156
72
-
Leu
CAA
[SRA]
>SRA1016533
SRR023846.546608
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
33
117
+
Leu
CAA
[SRA]
>C151073214
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
3043084
3043000
-
Leu
CAA
[Ensembl]
¡û
>W2010302909
CABVLI010000042
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
266358
266442
+
Leu
CAA
[ENA]
¡û
>W2010708501
JACHLN010000002
Alphaproteobacteria
Sphingomonas kyeonggiensis S00224 [JACHLN]
1347923
1347839
-
Leu
CAA
[ENA]
¡û
>W2011354880
RAPZ01000010
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
443667
443583
-
Leu
CAA
[ENA]
¡û
>W2011404449
RCWT01000009
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
726085
726169
+
Leu
CAA
[ENA]
¡û
>W2011404788
RCWY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
376017
375933
-
Leu
CAA
[ENA]
¡û
>W2011536239
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
1228580
1228496
-
Leu
CAA
[ENA]
¡û
>W2011578902
SGXR01000004
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
313425
313509
+
Leu
CAA
[ENA]
¡û
>W2011619348
SLUY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
443842
443758
-
Leu
CAA
[ENA]
¡û
>W2011623839
SLXW01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
669778
669862
+
Leu
CAA
[ENA]
¡û
>W2011624041
SLYA01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
691356
691440
+
Leu
CAA
[ENA]
¡û
>W2011624186
SLYD01000004
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
241363
241279
-
Leu
CAA
[ENA]
¡û
>W2011624292
SLYF01000008
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
15276
15360
+
Leu
CAA
[ENA]
¡û
>W2110161285
JAAVVE010000007
Alphaproteobacteria
Sphingomonas sp. dw_22 [JAAVVE]
59561
59645
+
Leu
CAA
[ENA]
¡û
>W2110243499
JACONT010000014
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
7238
7154
-
Leu
CAA
[ENA]
¡û
>W2110291011
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
980798
980714
-
Leu
CAA
[ENA]
¡û
>W2110302287
JADBIA010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
368884
368968
+
Leu
CAA
[ENA]
¡û
>W2110484169
JAFEMC010000001
Alphaproteobacteria
Sphingomonas sp. BT552 [JAFEMC]
677678
677594
-
Leu
CAA
[ENA]
¡û
>W2110497795
JAFHKN010000002
Alphaproteobacteria
Roseomonas aeriglobus KER25-12 [JAFHKN]
542589
542673
+
Leu
CAA
[ENA]
¡û
>W2110569896
JAGSNX010000001
Alphaproteobacteria
Microvirga sp. SRT01 [JAGSNX]
677678
677594
-
Leu
CAA
[ENA]
¡û
>C231287056
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
19767
19851
+
Leu
CAA
-
¡û
>C231562602
CP114791
Alphaproteobacteria
Sphingomonas sp. NIBR 02145 [CP114791]
45349
45433
+
Leu
CAA
-
¡û
>C241006607
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
16745
16829
+
Leu
CAA
-
¡û
>W1610730448
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1098636
1098720
+
Leu
CAA
[ENA]
¡û
>W1610732515
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
279769
279685
-
Leu
CAA
[ENA]
¡û
>W1610733231
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
140556
140640
+
Leu
CAA
[ENA]
¡û
>W1610733295
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
3482
3566
+
Leu
CAA
[ENA]
¡û
>W1610733498
LMLB01000017
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
434389
434473
+
Leu
CAA
[ENA]
¡û
>W1610733534
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
403107
403191
+
Leu
CAA
[ENA]
¡û
>W1610733556
LMLD01000008
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
245894
245810
-
Leu
CAA
[ENA]
¡û
>W1610734656
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
616905
616989
+
Leu
CAA
[ENA]
¡û
>W1610738808
LMPG01000002
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
989
905
-
Leu
CAA
[ENA]
¡û
>W1610739570
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
376305
376221
-
Leu
CAA
[ENA]
¡û
>W1710571530
FOVZ01000003
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
427626
427542
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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