This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107839 (35 seq.)
>W1711767399
MUZU01000009
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
99667
99583
-
Leu
CAA
[ENA]
¡û
>C171033418
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
3325070
3324986
-
Leu
CAA
-
¡û
>w028542
ABDD01000015
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
130933
130852
-
Leu
CAA
[ENA]
¡û
>w019952
AAUO01000006
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
149356
149270
-
Leu
CAA
[ENA]
¡û
>C08010576
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4901161
4901080
-
Leu
CAA
[Ensembl]
¡û
>WENV182556823
OJDH01000183
[OJDH] seawater metagenome; Sea water
30778
30862
+
Leu
CAA
[ENA]
¡û
>WENV182594484
OJIV01019057
[OJIV] seawater metagenome; Sea water
513
429
-
Leu
CAA
[ENA]
¡û
>C08010772
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
5044912
5044831
-
Leu
CAA
[Ensembl]
¡û
>WENV183056209
OLHI01001518
[OLHI] seawater metagenome; Sea water
3198
3282
+
Leu
CAA
[ENA]
¡û
>WENV183064704
OLII01000021
[OLII] seawater metagenome; Sea water
20473
20389
-
Leu
CAA
[ENA]
¡û
>WENV170025052
BCQL01197356
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
304
388
+
Leu
CAA
[ENA]
¡û
>WENV170781067
MAAB01029279
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3845
3761
-
Leu
CAA
[ENA]
¡û
>WENV170783172
MAAC01014691
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
48284
48200
-
Leu
CAA
[ENA]
¡û
>C181214196
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
4208828
4208744
-
Leu
CAA
-
¡û
>C191148754
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1609585
1609501
-
Leu
CAA
-
¡û
>C09109824
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4730278
4730194
-
Leu
CAA
[Ensembl]
¡û
>W2011498154
RXNU01000010
Gammaproteobacteria
Shewanella canadensis HAW-EB2 [RXNU]
22786
22702
-
Leu
CAA
[ENA]
¡û
>W2011498280
RXNV01000005
Gammaproteobacteria
Shewanella atlantica HAW-EB5 [RXNV]
159020
158936
-
Leu
CAA
[ENA]
¡û
>W2012063136
VJOS01000012
Gammaproteobacteria
Shewanella sp. YLB-08 [VJOS]
372539
372623
+
Leu
CAA
[ENA]
¡û
>W2012070232
VKGK01000001
Gammaproteobacteria
Shewanella hanedai JCM 20706 [VKGK]
202060
202144
+
Leu
CAA
[ENA]
¡û
>W2012106524
VOQB01000017
Gammaproteobacteria
Shewanella sp. YLB-07 [VOQB]
141682
141766
+
Leu
CAA
[ENA]
¡û
>W2110035227
BMPL01000001
Gammaproteobacteria
Shewanella hanedai JCM 20706 [BMPL]
105161
105245
+
Leu
CAA
[ENA]
¡û
>W2110305567
JADDKM010000009
Gammaproteobacteria
Shewanella benthica DSM 8812 [JADDKM]
113457
113373
-
Leu
CAA
[ENA]
¡û
>W2110667346
JAHZST010000002
Gammaproteobacteria
Shewanella sp. NR704-98 [JAHZST]
142068
141984
-
Leu
CAA
[ENA]
¡û
>C201098522
CP041614
Gammaproteobacteria
Shewanella sp. YLB-06 [CP041614]
5493292
5493208
-
Leu
CAA
-
¡û
>C211063180
CP045427
Gammaproteobacteria
Shewanella sp. YLB-09 [CP045427]
1176974
1177058
+
Leu
CAA
-
¡û
>C211063971
CP045503
Gammaproteobacteria
Shewanella sp. YLB-08 [CP045503]
803183
803267
+
Leu
CAA
-
¡û
>C231084315
CP059733
Gammaproteobacteria
Thalassomonas viridans XOM25 [CP059733, CP059734]
553215
553299
+
Leu
CAA
-
¡û
>C231084486
CP059735
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [CP059735, CP059736]
5991804
5991720
-
Leu
CAA
-
¡û
>C231209768
CP085636
Gammaproteobacteria
Shewanella sp. MTB7 [CP085636]
894667
894751
+
Leu
CAA
-
¡û
>C241056495
CP041329
Gammaproteobacteria
Shewanella sp. Scap07 [CP041329]
721694
721778
+
Leu
CAA
-
¡û
>C10112873
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
4187268
4187184
-
Leu
CAA
[Ensembl]
¡û
>W1511533802
JYNJ01000004
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
90049
90133
+
Leu
CAA
[ENA]
¡û
>W1610460576
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
713140
713224
+
Leu
CAA
[ENA]
¡û
>W1710460140
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
713140
713224
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK