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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108283 (89 seq.)
>W1710873529
LMMW01000001
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
184401
184317
-
Leu
CAA
[ENA]
¡û
>W1710873583
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
185817
185733
-
Leu
CAA
[ENA]
¡û
>W1710873669
LMMZ01000001
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
391948
392032
+
Leu
CAA
[ENA]
¡û
>W1710873886
LMND01000012
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
22797
22713
-
Leu
CAA
[ENA]
¡û
>W1710873915
LMNE01000005
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
7046
6962
-
Leu
CAA
[ENA]
¡û
>W1710874023
LMNG01000023
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
184919
184835
-
Leu
CAA
[ENA]
¡û
>W1710874636
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
1090400
1090484
+
Leu
CAA
[ENA]
¡û
>W1710878698
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
190011
189927
-
Leu
CAA
[ENA]
¡û
>W1710894022
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
4279
4195
-
Leu
CAA
[ENA]
¡û
>W1711083846
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
109973
110057
+
Leu
CAA
[ENA]
¡û
>W1711089886
LTAB01000008
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
12809
12725
-
Leu
CAA
[ENA]
¡û
>W1711250025
LYMJ01000004
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1711384701
MEDI01000322
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
31951
31867
-
Leu
CAA
[ENA]
¡û
>W1711434838
MINO01000090
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
3767
3683
-
Leu
CAA
[ENA]
¡û
>W1712084234
NHRH01000249
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
3664
3748
+
Leu
CAA
[ENA]
¡û
>C171019690
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1044007
1044091
+
Leu
CAA
-
¡û
>W131219292
ATYL01000001
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
920984
921068
+
Leu
CAA
[ENA]
¡û
>WENV180018919
FTBC01000022
[FTBC] metagenome; soil
6161
6077
-
Leu
CAA
[ENA]
¢þ
>WENV180035977
FTLB01087395
[FTLB] metagenome; soil
64
148
+
Leu
CAA
[ENA]
¢þ
>WENV180039706
LLBY010131934
[LLBY] soil metagenome; soil from tomato rhizosphere
464
380
-
Leu
CAA
[ENA]
¢þ
>WENV181227831
OFDN01053495
[OFDN] hot springs metagenome; Water
995
911
-
Leu
CAA
[ENA]
¢þ
>WENV181388974
OFRM01061895
[OFRM] wastewater metagenome; Exp Tend VB 0WW
210
126
-
Leu
CAA
[ENA]
¢þ
>W141231047
BATN01000101
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
4165
4249
+
Leu
CAA
[ENA]
¡û
>W141285079
JANF02000047
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
3367
3283
-
Leu
CAA
[ENA]
¡û
>WENV183729805
PJTR01000089
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
116317
116233
-
Leu
CAA
[ENA]
¢þ
>WENV183734237
PJTZ01000332
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
10203
10287
+
Leu
CAA
[ENA]
¢þ
>WENV183734338
PJTZ01002484
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
2225
2309
+
Leu
CAA
[ENA]
¢þ
>WENV183736882
PJUD01000078
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
72803
72887
+
Leu
CAA
[ENA]
¢þ
>WENV170136150
CENV01006087
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1778
1862
+
Leu
CAA
[ENA]
¢þ
>W141400560
JDRU02000858
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
3485
3569
+
Leu
CAA
[ENA]
¡û
>W141426734
JEMV01000019
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
47433
47517
+
Leu
CAA
[ENA]
¡û
>WENV170577466
FSSH01000037
[FSSH] freshwater metagenome; drinking water
317370
317454
+
Leu
CAA
[ENA]
¢þ
>WENV170577492
FSSH01000075
[FSSH] freshwater metagenome; drinking water
153949
154033
+
Leu
CAA
[ENA]
¢þ
>WENV170577945
FSSH01003488
[FSSH] freshwater metagenome; drinking water
686
770
+
Leu
CAA
[ENA]
¢þ
>W141484902
JFYY01000023
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
45567
45651
+
Leu
CAA
[ENA]
¡û
>C181047604
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
3968248
3968164
-
Leu
CAA
-
¡û
>C181072127
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
92888
92804
-
Leu
CAA
-
¡û
>C181089669
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
963466
963550
+
Leu
CAA
-
¡û
>W141520448
JGVR01000009
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
45379
45295
-
Leu
CAA
[ENA]
¡û
>C191063659
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
1893574
1893490
-
Leu
CAA
-
¡û
>C191103904
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
2050071
2049987
-
Leu
CAA
-
¡û
>C191163684
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
2599267
2599351
+
Leu
CAA
-
¡û
>W141726164
JNAC01000165
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
29052
29136
+
Leu
CAA
[ENA]
¡û
>W1910006996
BBQY01000004
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
450561
450645
+
Leu
CAA
[ENA]
¡û
>W1910199132
FBVT01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
56585
56669
+
Leu
CAA
[ENA]
¡û
>W1910199309
FBVW01000051
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
57084
57000
-
Leu
CAA
[ENA]
¡û
>W1910199320
FBVX01000009
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
65695
65611
-
Leu
CAA
[ENA]
¡û
>W1910199966
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1773321
1773405
+
Leu
CAA
[ENA]
¡û
>W1910613324
LGRA01000008
Alphaproteobacteria
Azospirillum sp. TSO35-2 [LGRA]
474600
474516
-
Leu
CAA
[ENA]
¡û
>W1910889711
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
2909743
2909827
+
Leu
CAA
[ENA]
¡û
>W1911074985
NMUA01000001
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
242608
242524
-
Leu
CAA
[ENA]
¡û
>W1911114841
NOIW01000114
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
12658
12574
-
Leu
CAA
[ENA]
¡û
>W1911139221
NOXS01000030
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
176247
176331
+
Leu
CAA
[ENA]
¡û
>W1911495414
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1615671
1615587
-
Leu
CAA
[ENA]
¡û
>W1911688299
QLJK01000012
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
26201
26285
+
Leu
CAA
[ENA]
¡û
>W1911802610
QYUL01000001
Alphaproteobacteria
Azospirillum cavernae K2W22B-5 [QYUL]
1801547
1801631
+
Leu
CAA
[ENA]
¡û
>W1810487222
QAYK01000014
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
146258
146342
+
Leu
CAA
[ENA]
¡û
>SRA1015682
SRR023846.157732
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
185
101
-
Leu
CAA
[SRA]
>C151074562
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
4351471
4351387
-
Leu
CAA
[Ensembl]
¡û
>W10126757
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
719546
719462
-
Leu
CAA
[ENA]
¡û
>C10111685
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2079298
2079214
-
Leu
CAA
[Ensembl]
¡û
>W1510941320
JFFT01000004
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
229281
229197
-
Leu
CAA
[ENA]
¡û
>C11119801
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1180673
1180589
-
Leu
CAA
[Ensembl]
¡û
>W11134018
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
719546
719462
-
Leu
CAA
[ENA]
¡û
>W1511541945
JZEX01000123
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
4347
4431
+
Leu
CAA
[ENA]
¡û
>W1511646475
LECE01000060
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
25374
25458
+
Leu
CAA
[ENA]
¡û
>C161003369
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
2849174
2849090
-
Leu
CAA
[Ensembl]
¡û
>C161092721
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
2594202
2594286
+
Leu
CAA
[Ensembl]
¡û
>W121071143
AJXQ01000092
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
18694
18778
+
Leu
CAA
[ENA]
¡û
>W1610076937
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
165446
165530
+
Leu
CAA
[ENA]
¡û
>W121031762
AHHA01000023
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
56114
56198
+
Leu
CAA
[ENA]
¡û
>W1610609166
LFVX01000030
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
33024
32940
-
Leu
CAA
[ENA]
¡û
>W1610735875
LMMW01000001
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
184401
184317
-
Leu
CAA
[ENA]
¡û
>W1610735929
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
185817
185733
-
Leu
CAA
[ENA]
¡û
>W1610736015
LMMZ01000001
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
391948
392032
+
Leu
CAA
[ENA]
¡û
>W1610736232
LMND01000012
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
22797
22713
-
Leu
CAA
[ENA]
¡û
>W1610736261
LMNE01000005
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
7046
6962
-
Leu
CAA
[ENA]
¡û
>W1610736369
LMNG01000023
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
184919
184835
-
Leu
CAA
[ENA]
¡û
>W1610736982
LMNU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
1090400
1090484
+
Leu
CAA
[ENA]
¡û
>W1610741044
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
190011
189927
-
Leu
CAA
[ENA]
¡û
>W1610754288
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
4279
4195
-
Leu
CAA
[ENA]
¡û
>W1610922599
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
109973
110057
+
Leu
CAA
[ENA]
¡û
>W1610924230
LTAB01000008
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
12809
12725
-
Leu
CAA
[ENA]
¡û
>W1611016907
LYMJ01000004
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
12805
12721
-
Leu
CAA
[ENA]
¡û
>W1710074626
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
165446
165530
+
Leu
CAA
[ENA]
¡û
>W1710505579
FMTU01000002
Alphaproteobacteria
Sphingobium faniae [FMTU]
415024
415108
+
Leu
CAA
[ENA]
¡û
>W1710527766
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
7606713
7606629
-
Leu
CAA
[ENA]
¡û
>W1710609160
FXBR01000005
Alphaproteobacteria
Azospirillum lipoferum [FXBR]
1657369
1657285
-
Leu
CAA
[ENA]
¡û
>W1710730453
LFVX01000030
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
33024
32940
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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