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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10923 (37 seq.)
>W1711019895
LQYG01000120
Bacillota
Heyndrickxia coagulans [LQYG]
2268
2359
+
Ser
GCT
[ENA]
¡û
>W1711019964
LQYH01000121
Bacillota
Heyndrickxia coagulans [LQYH]
2772
2863
+
Ser
GCT
[ENA]
¡û
>W1711020029
LQYI01000195
Bacillota
Heyndrickxia coagulans [LQYI]
5433
5524
+
Ser
GCT
[ENA]
¡û
>W1711020063
LQYJ01000172
Bacillota
Heyndrickxia coagulans [LQYJ]
24785
24694
-
Ser
GCT
[ENA]
¡û
>C171069047
CP017888
Bacillota
Heyndrickxia coagulans BC-HY1 [CP017888]
1615686
1615595
-
Ser
GCT
-
¡û
>W131054132
ANAP01000186
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
16481
16390
-
Ser
GCT
[ENA]
¡û
>W131054212
ANAQ01000218
Bacillota
Heyndrickxia coagulans H-1 [ANAQ]
1234
1325
+
Ser
GCT
[ENA]
¡û
>W131214806
ATUM01000051
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ATUM]
1951
2042
+
Ser
GCT
[ENA]
¡û
>WENV180664735
OCVV011168747
[OCVV] gut metagenome; gut
15
103
+
Ser
GCT
[ENA]
¢þ
>WENV180664736
OCVV011168747
[OCVV] gut metagenome; gut
15
103
+
Ser
GCT
[ENA]
¢þ
>W141169522
AXVW01000087
Bacillota
Heyndrickxia coagulans CSIL1 [AXVW]
6631
6540
-
Ser
GCT
[ENA]
¡û
>WENV182148288
OHLE01045459
[OHLE] human gut metagenome; feces
316
407
+
Ser
GCT
[ENA]
¢þ
>WENV170563476
CZCB01019501
[CZCB] anaerobic digester metagenome; anaerobic digester
522
431
-
Ser
GCT
[ENA]
¢þ
>WENV170683862
LFRM01008395
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
646
555
-
Ser
GCT
[ENA]
¢þ
>C181117328
CP025437
Bacillota
Heyndrickxia coagulans LA204 [CP025437]
2423583
2423492
-
Ser
GCT
-
¡û
>C181136990
CP026649
Bacillota
Heyndrickxia coagulans R11 [CP026649]
2419208
2419117
-
Ser
GCT
-
¡û
>C191138716
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
1604715
1604624
-
Ser
GCT
-
¡û
>W1910281567
FQUB01000052
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [FQUB]
1835
1926
+
Ser
GCT
[ENA]
¡û
>W1910896454
NFZN01000020
Bacillota
Heyndrickxia coagulans HS243 [NFZN]
51675
51584
-
Ser
GCT
[ENA]
¡û
>W1810756385
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1250500
1250409
-
Ser
GCT
[ENA]
¡û
>W1810806851
QRUW01000011
Bacillota
Heyndrickxia coagulans AF24-19 [QRUW]
67957
67866
-
Ser
GCT
[ENA]
¡û
>C151057944
CP009709
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [CP009709]
1138176
1138085
-
Ser
GCT
[Ensembl]
¡û
>C151070470
CP010525
Bacillota
Heyndrickxia coagulans HM-08 [CP010525]
1187349
1187440
+
Ser
GCT
[Ensembl]
¡û
>C151087819
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
3554193
3554102
-
Ser
GCT
[Ensembl]
¡û
>C11102822
CP003056
Bacillota
Heyndrickxia coagulans 36D1 [CP003056]
2614900
2614991
+
Ser
GCT
[Ensembl]
¡û
>W1511312746
JPSK01000108
Bacillota
Heyndrickxia coagulans GBI-30, 6086 [JPSK]
51914
51823
-
Ser
GCT
[ENA]
¡û
>W1511387977
JSVI01000017
Bacillota
Heyndrickxia coagulans P38 [JSVI]
3
94
+
Ser
GCT
[ENA]
¡û
>W1511595277
LBMQ01000055
Bacillota
Heyndrickxia coagulans NL01 [LBMQ]
13450
13359
-
Ser
GCT
[ENA]
¡û
>W11175713
AFWM01000014
Bacillota
Heyndrickxia coagulans XZL4 [AFWM]
2
93
+
Ser
GCT
[ENA]
¡û
>W121003696
AFEU01000004
Bacillota
Bacillus methanolicus PB1 [AFEU]
155
64
-
Ser
GCT
[ENA]
¡û
>W121104819
ALAS01000235
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ALAS]
15408
15317
-
Ser
GCT
[ENA]
¡û
>W1610574035
JZDH01000058
Bacillota
Heyndrickxia coagulans [JZDH]
51876
51785
-
Ser
GCT
[ENA]
¡û
>W1610868183
LQYG01000120
Bacillota
Heyndrickxia coagulans [LQYG]
2268
2359
+
Ser
GCT
[ENA]
¡û
>W1610868252
LQYH01000121
Bacillota
Heyndrickxia coagulans [LQYH]
2772
2863
+
Ser
GCT
[ENA]
¡û
>W1610868317
LQYI01000195
Bacillota
Heyndrickxia coagulans [LQYI]
5433
5524
+
Ser
GCT
[ENA]
¡û
>W1610868351
LQYJ01000172
Bacillota
Heyndrickxia coagulans [LQYJ]
24785
24694
-
Ser
GCT
[ENA]
¡û
>W1710686814
JZDH01000058
Bacillota
Heyndrickxia coagulans [JZDH]
51876
51785
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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