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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109657 (11 seq.)
>WENV183675485
ORJL011515646
[ORJL] groundwater metagenome; groundwater
47684
47600
-
Leu
CAG
[ENA]
¡û
>WENV183685585
ORMF010867995
[ORMF] groundwater metagenome; groundwater
48441
48357
-
Leu
CAG
[ENA]
¡û
>WENV170716460
LSQX01000063
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6841
6925
+
Leu
CAG
[ENA]
¡û
>W1910741956
MHVN01000001
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_02_FULL_38_22 [MHVN]
2572
2654
+
Leu
CAG
[ENA]
¡û
>W1910742126
MHVT01000020
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_12_FULL_38_34 [MHVT]
2227
2309
+
Leu
CAG
[ENA]
¡û
>W1910742641
MHWL01000010
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_02_FULL_38_13 [MHWL]
2561
2643
+
Leu
CAG
[ENA]
¡û
>W1910742824
MHWS01000015
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_12_FULL_39_16 [MHWS]
7588
7506
-
Leu
CAG
[ENA]
¡û
>W2010875386
MHVN01000001
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_02_FULL_38_22 [MHVN]
2572
2654
+
Leu
CAG
[ENA]
¡û
>W2010875556
MHVT01000020
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_12_FULL_38_34 [MHVT]
2227
2309
+
Leu
CAG
[ENA]
¡û
>W2010876072
MHWL01000010
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_02_FULL_38_13 [MHWL]
2561
2643
+
Leu
CAG
[ENA]
¡û
>W2010876256
MHWS01000015
Unclassified
Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_12_FULL_39_16 [MHWS]
7588
7506
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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