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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112338 (17 seq.)
>W1711504006
MKUD01000045
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
416818
416902
+
Thr
TGT
[ENA]
¡û
>W1711769475
MVEC01000020
Bacteroidota
Spirosoma sp. 209 [MVEC]
88637
88723
+
Thr
TGT
[ENA]
¡û
>C171030755
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1488868
1488784
-
Thr
TGT
-
¡û
>C171104409
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
2668649
2668565
-
Thr
TGT
-
¡û
>C171104443
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
5475107
5475023
-
Thr
TGT
-
¡û
>W131169835
ARFA01000045
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
870
786
-
Thr
TGT
[ENA]
¡û
>W131169898
ARFC01000007
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
200034
200118
+
Thr
TGT
[ENA]
¡û
>W131169938
ARFD01000042
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
1075
991
-
Thr
TGT
[ENA]
¡û
>C181113124
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
6183828
6183912
+
Thr
TGT
-
¡û
>W09109918
ABUR01000007
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
176721
176635
-
Thr
TGT
[ENA]
¡û
>W1911497264
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
986011
986095
+
Thr
TGT
[ENA]
¡û
>W1810364384
PVTE01000014
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
415
331
-
Thr
TGT
[ENA]
¡û
>W1810692057
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
657845
657930
+
Thr
TGT
[ENA]
¡û
>SRA1014199
SRR023845.36176
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
49
135
+
Thr
TGT
[SRA]
>C151068631
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3808640
3808556
-
Thr
TGT
[Ensembl]
¡û
>C10111791
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3492485
3492399
-
Thr
TGT
[Ensembl]
¡û
>W1710558183
FOLQ01000002
Bacteroidota
Spirosoma endophyticum [FOLQ]
738611
738695
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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