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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113685 (28 seq.)
>W1711129646
LUUF01000019
Gammaproteobacteria
Methylomonas methanica [LUUF]
131555
131472
-
Leu
TAG
[ENA]
¡û
>W1711129718
LUUG01000139
Gammaproteobacteria
Methylomonas methanica [LUUG]
83535
83618
+
Leu
TAG
[ENA]
¡û
>W1711129756
LUUH01000088
Gammaproteobacteria
Methylomonas methanica [LUUH]
106062
106145
+
Leu
TAG
[ENA]
¡û
>W1711129780
LUUI01000123
Gammaproteobacteria
Methylomonas lenta [LUUI]
2066
2149
+
Leu
TAG
[ENA]
¡û
>W1711129841
LUUJ01000134
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
53074
53157
+
Leu
TAG
[ENA]
¡û
>W1711129884
LUUK01000214
Gammaproteobacteria
Methylomonas koyamae [LUUK]
8110
8193
+
Leu
TAG
[ENA]
¡û
>W1711129904
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
108358
108275
-
Leu
TAG
[ENA]
¡û
>W131155754
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1999847
1999764
-
Leu
TAG
[ENA]
¡û
>W1711494869
MKMC01000067
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
69700
69617
-
Leu
TAG
[ENA]
¡û
>W141219943
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
900816
900733
-
Leu
TAG
[ENA]
¡û
>WENV170577581
FSSH01000226
[FSSH] freshwater metagenome; drinking water
70405
70488
+
Leu
TAG
[ENA]
¢þ
>C181088680
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
3754703
3754620
-
Leu
TAG
-
¡û
>C191105413
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1336158
1336241
+
Leu
TAG
-
¡û
>W141733718
JNLB01000017
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
79417
79500
+
Leu
TAG
[ENA]
¡û
>W1810154918
PIZT01000005
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
17303
17220
-
Leu
TAG
[ENA]
¡û
>C11114734
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4701219
4701136
-
Leu
TAG
[Ensembl]
¡û
>W1511397885
JTDD01000120
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
6652
6569
-
Leu
TAG
[ENA]
¡û
>C161072130
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3639845
3639762
-
Leu
TAG
[Ensembl]
¡û
>C161072441
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3491740
3491823
+
Leu
TAG
[Ensembl]
¡û
>W1610046474
BBCK01000018
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
15255
15172
-
Leu
TAG
[ENA]
¡û
>W1610940719
LUUF01000019
Gammaproteobacteria
Methylomonas methanica [LUUF]
131555
131472
-
Leu
TAG
[ENA]
¡û
>W1610940791
LUUG01000139
Gammaproteobacteria
Methylomonas methanica [LUUG]
83535
83618
+
Leu
TAG
[ENA]
¡û
>W1610940829
LUUH01000088
Gammaproteobacteria
Methylomonas methanica [LUUH]
106062
106145
+
Leu
TAG
[ENA]
¡û
>W1610940853
LUUI01000123
Gammaproteobacteria
Methylomonas lenta [LUUI]
2066
2149
+
Leu
TAG
[ENA]
¡û
>W1610940914
LUUJ01000134
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
53074
53157
+
Leu
TAG
[ENA]
¡û
>W1610940957
LUUK01000214
Gammaproteobacteria
Methylomonas koyamae [LUUK]
8110
8193
+
Leu
TAG
[ENA]
¡û
>W1610940977
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
108358
108275
-
Leu
TAG
[ENA]
¡û
>W1710043270
BBCK01000018
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
15255
15172
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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