This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114020 (99 seq.)
>W1711090564
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57444
57361
-
Tyr
GTA
[ENA]
¡û
>W1711090585
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
73175
73258
+
Tyr
GTA
[ENA]
¡û
>W1711090586
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
73456
73539
+
Tyr
GTA
[ENA]
¡û
>W1711090674
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6485
6568
+
Tyr
GTA
[ENA]
¡û
>W1711090683
LTAW01000015
Gammaproteobacteria
Marinomonas atlantica [LTAW]
1067
984
-
Tyr
GTA
[ENA]
¡û
>W1711090744
LTAX01000023
Gammaproteobacteria
Marinomonas gallaica [LTAX]
1247
1164
-
Tyr
GTA
[ENA]
¡û
>W1711090745
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30870
30787
-
Tyr
GTA
[ENA]
¡û
>W1712081302
NHNK01000015
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
60483
60400
-
Tyr
GTA
[ENA]
¡û
>W1712081312
NHNK01000034
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
27304
27387
+
Tyr
GTA
[ENA]
¡û
>C013005
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4266717
4266800
+
Tyr
GTA
[Ensembl]
¡û
>C013007
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4856227
4856144
-
Tyr
GTA
[Ensembl]
¡û
>w013342
AANE01000026
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
17269
17354
+
Tyr
GTA
[ENA]
¡û
>WENV180042125
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11077
11160
+
Tyr
GTA
[ENA]
¢þ
>WENV180109212
OAPJ01030238
[OAPJ] marine metagenome; ENVO 00002150
196
113
-
Tyr
GTA
[ENA]
¢þ
>W141191398
AYOZ01000009
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
556
473
-
Tyr
GTA
[ENA]
¡û
>W141191399
AYOZ01000010
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
57549
57466
-
Tyr
GTA
[ENA]
¡û
>W141284692
JAMB01000010
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
1143
1060
-
Tyr
GTA
[ENA]
¡û
>W141284694
JAMB01000012
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
23503
23586
+
Tyr
GTA
[ENA]
¡û
>WENV170210291
CEPV01182083
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
654
737
+
Tyr
GTA
[ENA]
¢þ
>WENV170213792
CEPX01050479
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
118
-
Tyr
GTA
[ENA]
¢þ
>WENV170214297
CEPX01076268
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1635
1552
-
Tyr
GTA
[ENA]
¢þ
>WENV170780559
MAAB01006307
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
33
116
+
Tyr
GTA
[ENA]
¢þ
>WENV170780692
MAAB01014048
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2168
2085
-
Tyr
GTA
[ENA]
¢þ
>WENV170780925
MAAB01028417
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
169
252
+
Tyr
GTA
[ENA]
¢þ
>W09106478
AAVH01000032
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
2175
2258
+
Tyr
GTA
[ENA]
¡û
>W09106486
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
592
675
+
Tyr
GTA
[ENA]
¡û
>C191039804
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3288742
3288825
+
Tyr
GTA
-
¡û
>C191039806
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3751425
3751342
-
Tyr
GTA
-
¡û
>W1910584845
JYBL01000026
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
20506
20589
+
Tyr
GTA
[ENA]
¡û
>W1910914882
NHTT01000007
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
213201
213118
-
Tyr
GTA
[ENA]
¡û
>W1910914899
NHTT01000018
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
57701
57618
-
Tyr
GTA
[ENA]
¡û
>W1810606229
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
161998
161915
-
Tyr
GTA
[ENA]
¡û
>W1810606250
QGOK01000024
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
18916
18999
+
Tyr
GTA
[ENA]
¡û
>W1810625260
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
60848
60765
-
Tyr
GTA
[ENA]
¡û
>W1810625271
QHJF01000032
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
13099
13182
+
Tyr
GTA
[ENA]
¡û
>W1810676281
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
80473
80390
-
Tyr
GTA
[ENA]
¡û
>W1810676283
QKLW01000013
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
11310
11393
+
Tyr
GTA
[ENA]
¡û
>W1810679678
QKRA01000012
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
60504
60421
-
Tyr
GTA
[ENA]
¡û
>W1810679682
QKRA01000015
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
18589
18672
+
Tyr
GTA
[ENA]
¡û
>W1810720348
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
53672
53755
+
Tyr
GTA
[ENA]
¡û
>W1810720359
QNRF01000011
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
63096
63013
-
Tyr
GTA
[ENA]
¡û
>W1810721692
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
131194
131277
+
Tyr
GTA
[ENA]
¡û
>W1810721720
QNSE01000017
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
11441
11524
+
Tyr
GTA
[ENA]
¡û
>W1810759712
QPJQ01000024
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
32958
33041
+
Tyr
GTA
[ENA]
¡û
>W1810759722
QPJQ01000025
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
57506
57423
-
Tyr
GTA
[ENA]
¡û
>W1810885378
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
16473
16390
-
Tyr
GTA
[ENA]
¡û
>W1810885379
QUNG01000016
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
7854
7937
+
Tyr
GTA
[ENA]
¡û
>C11114636
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
234290
234373
+
Tyr
GTA
[Ensembl]
¡û
>C11114705
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
683269
683186
-
Tyr
GTA
[Ensembl]
¡û
>C11115030
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3700614
3700531
-
Tyr
GTA
[Ensembl]
¡û
>C11115059
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
636090
636007
-
Tyr
GTA
[Ensembl]
¡û
>W1510741319
CYHG01000004
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
299896
299979
+
Tyr
GTA
[ENA]
¡û
>W1510741347
CYHG01000012
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
44491
44408
-
Tyr
GTA
[ENA]
¡û
>W1510741348
CYHG01000012
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
44197
44114
-
Tyr
GTA
[ENA]
¡û
>W1511518522
JXYC01000016
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
379
296
-
Tyr
GTA
[ENA]
¡û
>W1511518542
JXYC01000041
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
70142
70059
-
Tyr
GTA
[ENA]
¡û
>W1610503738
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
45643
45560
-
Tyr
GTA
[ENA]
¡û
>W1610503739
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71550
71467
-
Tyr
GTA
[ENA]
¡û
>W1610503776
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
123837
123920
+
Tyr
GTA
[ENA]
¡û
>W1610503839
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
19048
18965
-
Tyr
GTA
[ENA]
¡û
>W1610503840
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
18767
18684
-
Tyr
GTA
[ENA]
¡û
>W1610504003
FLOE01000007
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
10395
10478
+
Tyr
GTA
[ENA]
¡û
>W1610504017
FLOE01000018
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
598
515
-
Tyr
GTA
[ENA]
¡û
>W1610506632
FLRA01000008
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
49556
49473
-
Tyr
GTA
[ENA]
¡û
>W1610506646
FLRA01000019
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
6308
6391
+
Tyr
GTA
[ENA]
¡û
>W1610506707
FLRB01000001
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
49556
49473
-
Tyr
GTA
[ENA]
¡û
>W1610506713
FLRB01000003
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
6308
6391
+
Tyr
GTA
[ENA]
¡û
>W1610540023
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68986
69069
+
Tyr
GTA
[ENA]
¡û
>W1610540069
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60467
60384
-
Tyr
GTA
[ENA]
¡û
>W1610540106
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
69539
69622
+
Tyr
GTA
[ENA]
¡û
>W1610540158
JSEN01000018
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
14889
14972
+
Tyr
GTA
[ENA]
¡û
>W1610540199
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
69539
69622
+
Tyr
GTA
[ENA]
¡û
>W1610540255
JSEO01000019
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
14889
14972
+
Tyr
GTA
[ENA]
¡û
>W1610632884
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
299896
299979
+
Tyr
GTA
[ENA]
¡û
>W1610632912
LIQF01000012
Gammaproteobacteria
Marinomonas fungiae [LIQF]
44491
44408
-
Tyr
GTA
[ENA]
¡û
>W1610632913
LIQF01000012
Gammaproteobacteria
Marinomonas fungiae [LIQF]
44197
44114
-
Tyr
GTA
[ENA]
¡û
>W1610924804
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57444
57361
-
Tyr
GTA
[ENA]
¡û
>W1610924825
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
73175
73258
+
Tyr
GTA
[ENA]
¡û
>W1610924826
LTAV01000020
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
73456
73539
+
Tyr
GTA
[ENA]
¡û
>W1610924914
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6485
6568
+
Tyr
GTA
[ENA]
¡û
>W1610924923
LTAW01000015
Gammaproteobacteria
Marinomonas atlantica [LTAW]
1067
984
-
Tyr
GTA
[ENA]
¡û
>W1610924984
LTAX01000023
Gammaproteobacteria
Marinomonas gallaica [LTAX]
1247
1164
-
Tyr
GTA
[ENA]
¡û
>W1610924985
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30870
30787
-
Tyr
GTA
[ENA]
¡û
>W1710496567
FLOB01000013
Gammaproteobacteria
Marinomonas spartinae [FLOB]
45643
45560
-
Tyr
GTA
[ENA]
¡û
>W1710496568
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71550
71467
-
Tyr
GTA
[ENA]
¡û
>W1710496605
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
123837
123920
+
Tyr
GTA
[ENA]
¡û
>W1710496668
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
19048
18965
-
Tyr
GTA
[ENA]
¡û
>W1710496669
FLOC01000017
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
18767
18684
-
Tyr
GTA
[ENA]
¡û
>W1710583989
FQVF01000023
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
552
469
-
Tyr
GTA
[ENA]
¡û
>W1710583992
FQVF01000025
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
57824
57741
-
Tyr
GTA
[ENA]
¡û
>W1710643044
JSEE01000002
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68986
69069
+
Tyr
GTA
[ENA]
¡û
>W1710643090
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60467
60384
-
Tyr
GTA
[ENA]
¡û
>W1710643127
JSEN01000005
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
69539
69622
+
Tyr
GTA
[ENA]
¡û
>W1710643179
JSEN01000018
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
14889
14972
+
Tyr
GTA
[ENA]
¡û
>W1710643220
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
69539
69622
+
Tyr
GTA
[ENA]
¡û
>W1710643276
JSEO01000019
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
14889
14972
+
Tyr
GTA
[ENA]
¡û
>W1710767316
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
299896
299979
+
Tyr
GTA
[ENA]
¡û
>W1710767344
LIQF01000012
Gammaproteobacteria
Marinomonas fungiae [LIQF]
44491
44408
-
Tyr
GTA
[ENA]
¡û
>W1710767345
LIQF01000012
Gammaproteobacteria
Marinomonas fungiae [LIQF]
44197
44114
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK