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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114361 (82 seq.)
>W1710785177
LJHQ01000011
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
119512
119596
+
Tyr
GTA
[ENA]
¡û
>W1710858023
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35552
35468
-
Tyr
GTA
[ENA]
¡û
>W1710869520
LMJU01000012
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
385168
385252
+
Tyr
GTA
[ENA]
¡û
>W1710869646
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
293882
293966
+
Tyr
GTA
[ENA]
¡û
>W1710893371
LNER01000452
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13814
13898
+
Tyr
GTA
[ENA]
¡û
>W1711073114
LSIG01000007
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
7201
7117
-
Tyr
GTA
[ENA]
¡û
>W1711073292
LSIK01000129
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
37284
37368
+
Tyr
GTA
[ENA]
¡û
>W1711074618
LSJR01000443
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1528
1612
+
Tyr
GTA
[ENA]
¡û
>W1711074743
LSJU01001251
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1525
1609
+
Tyr
GTA
[ENA]
¡û
>W1711074758
LSJV01000045
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
3907
3991
+
Tyr
GTA
[ENA]
¡û
>W1711075561
LSKN01000086
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
2227
2143
-
Tyr
GTA
[ENA]
¡û
>W1711385462
MEEG01000045
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
7734
7818
+
Tyr
GTA
[ENA]
¡û
>W1711502391
MKSQ01000019
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
56202
56286
+
Tyr
GTA
[ENA]
¡û
>W1711505833
MKVW01000006
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
335881
335965
+
Tyr
GTA
[ENA]
¡û
>C171049981
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3395172
3395088
-
Tyr
GTA
-
¡û
>C171057753
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5083938
5083854
-
Tyr
GTA
-
¡û
>WENV180017911
FSXV01000060
[FSXV] metagenome; soil
18577
18661
+
Tyr
GTA
[ENA]
¡û
>WENV180017914
FSXV01000078
[FSXV] metagenome; soil
19107
19023
-
Tyr
GTA
[ENA]
¡û
>WENV180018716
FTAI01000046
[FTAI] metagenome; soil
200
116
-
Tyr
GTA
[ENA]
¡û
>WENV180022783
FTGS01001269
[FTGS] metagenome; soil
716
632
-
Tyr
GTA
[ENA]
¡û
>WENV180026811
FTIU01204770
[FTIU] metagenome; soil
539
623
+
Tyr
GTA
[ENA]
¡û
>WENV180030336
FTJM01000273
[FTJM] metagenome; soil
209
125
-
Tyr
GTA
[ENA]
¡û
>WENV180031677
FTJQ01147424
[FTJQ] metagenome; soil
150
234
+
Tyr
GTA
[ENA]
¡û
>WENV180032109
FTJU01130319
[FTJU] metagenome; soil
459
375
-
Tyr
GTA
[ENA]
¡û
>WENV180095550
MTBK01073737
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
701
785
+
Tyr
GTA
[ENA]
¡û
>WENV180309233
OBJR01721368
[OBJR] soil metagenome; soil
38
122
+
Tyr
GTA
[ENA]
¡û
>WENV180344923
OBLL01341353
[OBLL] soil metagenome; soil
20
104
+
Tyr
GTA
[ENA]
¡û
>WENV183093171
OLLU01000137
[OLLU] soil metagenome; soil
7357
7441
+
Tyr
GTA
[ENA]
¡û
>WENV170576941
FRDC01002340
[FRDC] freshwater metagenome; water
49092
49008
-
Tyr
GTA
[ENA]
¡û
>WENV170577803
FSSH01001365
[FSSH] freshwater metagenome; drinking water
4756
4840
+
Tyr
GTA
[ENA]
¡û
>WENV170680769
LFEF01019935
[LFEF] freshwater metagenome; waterbloom
25
109
+
Tyr
GTA
[ENA]
¡û
>WENV171003198
NNBT01002345
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
11935
12019
+
Tyr
GTA
[ENA]
¡û
>WENV171003694
NNBV01000276
[NNBV] plant metagenome; symbiotic tissue sample KVS11
53760
53844
+
Tyr
GTA
[ENA]
¡û
>C191014036
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1936894
1936810
-
Tyr
GTA
-
¡û
>W141805309
JPKG01000040
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
85851
85767
-
Tyr
GTA
[ENA]
¡û
>W141815796
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
89959
89875
-
Tyr
GTA
[ENA]
¡û
>W1910840140
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
399430
399346
-
Tyr
GTA
[ENA]
¡û
>W1910840183
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
2515472
2515388
-
Tyr
GTA
[ENA]
¡û
>W1910847640
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
196226
196142
-
Tyr
GTA
[ENA]
¡û
>W1911705857
QORU01000001
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
534124
534208
+
Tyr
GTA
[ENA]
¡û
>W1810251999
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
247795
247879
+
Tyr
GTA
[ENA]
¡û
>W1810368599
PVZS01000014
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
136765
136681
-
Tyr
GTA
[ENA]
¡û
>W1810463338
PZZL01000013
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
40706
40790
+
Tyr
GTA
[ENA]
¡û
>W1810463360
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4243944
4244028
+
Tyr
GTA
[ENA]
¡û
>W1810783303
QQTO01000019
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
617523
617607
+
Tyr
GTA
[ENA]
¡û
>W1810783331
QQTP01000001
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
617523
617607
+
Tyr
GTA
[ENA]
¡û
>W2010303391
CABVLT010000013
Alphaproteobacteria
Bosea sp. EC-HK365B [CABVLT]
282761
282845
+
Tyr
GTA
[ENA]
¡û
>W2010310901
CABWMJ010000023
Alphaproteobacteria
Bosea sp. 127 [CABWMJ]
340907
340823
-
Tyr
GTA
[ENA]
¡û
>W2010311296
CABWMQ010000003
Alphaproteobacteria
Bosea sp. 29B [CABWMQ]
243381
243465
+
Tyr
GTA
[ENA]
¡û
>W2010639476
JABVWW010000003
Alphaproteobacteria
Methylocystis sp. FS [JABVWW]
197102
197018
-
Tyr
GTA
[ENA]
¡û
>W2010700118
JACHFP010000013
Alphaproteobacteria
Bosea sp. DSM 102914 [JACHFP]
5601
5517
-
Tyr
GTA
[ENA]
¡û
>W2010930227
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
399430
399346
-
Tyr
GTA
[ENA]
¡û
>W2010934308
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
196226
196142
-
Tyr
GTA
[ENA]
¡û
>W2011280460
QORU01000001
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
534124
534208
+
Tyr
GTA
[ENA]
¡û
>W2011773209
UBPT01000023
Alphaproteobacteria
Rhizobiales bacterium [UBPT]
140037
140121
+
Tyr
GTA
[ENA]
¡û
>W2011780113
UBVX01000044
Alphaproteobacteria
Rhizobiales bacterium [UBVX]
13639
13723
+
Tyr
GTA
[ENA]
¡û
>W2012017111
VFMG01000001
Alphaproteobacteria
Bosea sp. AK1 [VFMG]
425991
425907
-
Tyr
GTA
[ENA]
¡û
>W2012022489
VFQA01000007
Alphaproteobacteria
Bosea vestrisii 3192 [VFQA]
120204
120288
+
Tyr
GTA
[ENA]
¡û
>W2110098599
CAJFEA010000004
Alphaproteobacteria
Bosea sp. 46 [CAJFEA]
54209
54293
+
Tyr
GTA
[ENA]
¡û
>W2110098666
CAJFEB010000017
Alphaproteobacteria
Bosea sp. 7B [CAJFEB]
907015
906931
-
Tyr
GTA
[ENA]
¡û
>W2110424821
JAELTI010000019
Alphaproteobacteria
Bosea sp. ASV33 [JAELTI]
38859
38775
-
Tyr
GTA
[ENA]
¡û
>W2110517938
JAFNIH010000023
Alphaproteobacteria
Pinisolibacter sp. B13 [JAFNIH]
192679
192595
-
Tyr
GTA
[ENA]
¡û
>C201110354
CP042331
Alphaproteobacteria
Bosea sp. F3-2 [CP042331]
159026
159110
+
Tyr
GTA
-
¡û
>C231458668
CP102774
Alphaproteobacteria
Bosea sp. NBC_00436 [CP102774]
2429029
2428945
-
Tyr
GTA
-
¡û
>C241007101
AP022848
Alphaproteobacteria
Bosea sp. ANAM02 [AP022848]
2349332
2349416
+
Tyr
GTA
-
¡û
>C241135318
CP049258
Alphaproteobacteria
Nordella sp. HKS 07 [CP049258]
6264272
6264188
-
Tyr
GTA
-
¡û
>C241320889
CP134779
Alphaproteobacteria
Bosea sp. 685 [CP134779]
2001589
2001673
+
Tyr
GTA
-
¡û
>W1511353012
JROW01000116
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
33022
32938
-
Tyr
GTA
[ENA]
¡û
>W1610550604
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
167838
167922
+
Tyr
GTA
[ENA]
¡û
>W1610617190
LGSZ01000078
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
116634
116718
+
Tyr
GTA
[ENA]
¡û
>W1610720369
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35552
35468
-
Tyr
GTA
[ENA]
¡û
>W1610913923
LSJR01000443
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1528
1612
+
Tyr
GTA
[ENA]
¡û
>W1610914048
LSJU01001251
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1525
1609
+
Tyr
GTA
[ENA]
¡û
>W1610914866
LSKN01000086
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
2227
2143
-
Tyr
GTA
[ENA]
¡û
>W1710535116
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
508430
508514
+
Tyr
GTA
[ENA]
¡û
>W1710538943
FNUY01000003
Alphaproteobacteria
Bosea lathyri [FNUY]
537241
537325
+
Tyr
GTA
[ENA]
¡û
>W1710544009
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
788011
787927
-
Tyr
GTA
[ENA]
¡û
>W1710556990
FOKP01000008
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
166060
165976
-
Tyr
GTA
[ENA]
¡û
>W1710564925
FOQV01000006
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
274713
274797
+
Tyr
GTA
[ENA]
¡û
>W1710596445
FTMO01000005
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
168047
167963
-
Tyr
GTA
[ENA]
¡û
>W1710660439
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
167838
167922
+
Tyr
GTA
[ENA]
¡û
>W1710742804
LGSZ01000078
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
116634
116718
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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