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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114529 (74 seq.)
>W1710815807
LKKO01000039
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
43602
43686
+
Leu
CAG
[ENA]
¡û
>W1710872796
LMMG01000041
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
765724
765808
+
Leu
CAG
[ENA]
¡û
>W1710873237
LMMQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
25927
25843
-
Leu
CAG
[ENA]
¡û
>W1710873358
LMMS01000014
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
35035
34951
-
Leu
CAG
[ENA]
¡û
>W1710873939
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
61919
62003
+
Leu
CAG
[ENA]
¡û
>W1710874016
LMNG01000015
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
33234
33150
-
Leu
CAG
[ENA]
¡û
>W1710874268
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
86437
86353
-
Leu
CAG
[ENA]
¡û
>W1710874477
LMNQ01000007
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
85569
85485
-
Leu
CAG
[ENA]
¡û
>W1710874674
LMNU01000045
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
148941
148857
-
Leu
CAG
[ENA]
¡û
>W131051719
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
21337
21253
-
Leu
CAG
[ENA]
¡û
>WENV180028411
FTJA01228577
[FTJA] metagenome; soil
182
98
-
Leu
CAG
[ENA]
¡û
>WENV180029818
FTJL01006764
[FTJL] metagenome; soil
1940
2024
+
Leu
CAG
[ENA]
¡û
>WENV180111470
OAPN01088688
[OAPN] marine metagenome; 2011
324
408
+
Leu
CAG
[ENA]
¡û
>w001796
AAAP01000108
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
381
465
+
Leu
CAG
[ENA]
¡û
>WENV181380220
OFRD01042651
[OFRD] wastewater metagenome; Exp Tend CN 100WW
109
25
-
Leu
CAG
[ENA]
¡û
>C08006648
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5213311
5213395
+
Leu
CAG
[Ensembl]
¡û
>WENV183726077
PJQF01076097
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
176
260
+
Leu
CAG
[ENA]
¡û
>WENV170577313
FRDC01004414
[FRDC] freshwater metagenome; water
5759
5843
+
Leu
CAG
[ENA]
¡û
>WENV170590954
FUFK010745972
[FUFK] metagenome; unknown
198
282
+
Leu
CAG
[ENA]
¡û
>WENV170680680
LFEF01009719
[LFEF] freshwater metagenome; waterbloom
460
544
+
Leu
CAG
[ENA]
¡û
>C181180014
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
1856743
1856659
-
Leu
CAG
-
¡û
>C181180035
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
2096317
2096401
+
Leu
CAG
-
¡û
>W09107191
ABFR01000008
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
106403
106487
+
Leu
CAG
[ENA]
¡û
>W1911148439
NPEW01000003
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
52416
52332
-
Leu
CAG
[ENA]
¡û
>W1810079850
PELK01000009
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
612
696
+
Leu
CAG
[ENA]
¡û
>W1810079878
PELK01001186
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
88
4
-
Leu
CAG
[ENA]
¡û
>W2010105768
BJZU01000144
Alphaproteobacteria
Methylobacterium oxalidis NBRC 107715 [BJZU]
17553
17637
+
Leu
CAG
[ENA]
¡û
>W2010105807
BJZV01000017
Alphaproteobacteria
Methylobacterium gnaphalii NBRC 107716 [BJZV]
7848
7764
-
Leu
CAG
[ENA]
¡û
>W2010168643
CABFPH010000004
Alphaproteobacteria
Methylobacterium sp. SB0023/3 [CABFPH]
118632
118548
-
Leu
CAG
[ENA]
¡û
>W2010169345
CABFVH010000032
Alphaproteobacteria
Methylobacterium dankookense SW08-7 [CABFVH]
55176
55260
+
Leu
CAG
[ENA]
¡û
>W2010324531
CACTHX010000004
Alphaproteobacteria
Methylobacterium brachiatum [CACTHX]
352516
352600
+
Leu
CAG
[ENA]
¡û
>W2010472586
JAAHTB010000026
Alphaproteobacteria
Methylobacterium sp. BTF04 [JAAHTB]
960
876
-
Leu
CAG
[ENA]
¡û
>W2010493406
JAAKGV010000013
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
180504
180588
+
Leu
CAG
[ENA]
¡û
>W2010493407
JAAKGV010000013
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
181029
181113
+
Leu
CAG
[ENA]
¡û
>W2010535236
JAAPAY010000044
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
44943
44859
-
Leu
CAG
[ENA]
¡û
>W2010712754
JACHOP010000021
Alphaproteobacteria
Methylorubrum rhodinum DSM 2163 [JACHOP]
76369
76453
+
Leu
CAG
[ENA]
¡û
>W2010740303
JACJIB010000004
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
11315
11231
-
Leu
CAG
[ENA]
¡û
>W2010781950
LMUU01000158
Alphaproteobacteria
Beijerinckia sp. L45 [LMUU]
186818
186902
+
Leu
CAG
[ENA]
¡û
>W2011398162
RCIG01000029
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
68986
69070
+
Leu
CAG
[ENA]
¡û
>W2011540783
SCOS01000052
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
29834
29750
-
Leu
CAG
[ENA]
¡û
>W2011638905
SMNT01000018
Alphaproteobacteria
Methylobacterium sp. 17J42-1 [SMNT]
38238
38322
+
Leu
CAG
[ENA]
¡û
>W2012221251
VZZJ01000015
Alphaproteobacteria
Methylobacterium sp. YIM 132548 [VZZJ]
100412
100496
+
Leu
CAG
[ENA]
¡û
>W2012311070
WEKV01000008
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
608233
608317
+
Leu
CAG
[ENA]
¡û
>W2110049092
BMYJ01000003
Alphaproteobacteria
Gemmobacter tilapiae KCTC 23310 [BMYJ]
31645
31729
+
Leu
CAG
[ENA]
¡û
>W2110278924
JACWCU010000169
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
6502
6418
-
Leu
CAG
[ENA]
¡û
>W2110278926
JACWCU010000180
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
55066
55150
+
Leu
CAG
[ENA]
¡û
>C201079730
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
4769151
4769235
+
Leu
CAG
-
¡û
>C201203454
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
4687013
4687097
+
Leu
CAG
-
¡û
>C231324765
CP092848
Alphaproteobacteria
Methylobacterium organophilum WPA_B [CP092848]
488002
487918
-
Leu
CAG
-
¡û
>W2110752801
NKUI01000029
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
13150
13234
+
Leu
CAG
[ENA]
¡û
>W2130017656
JACWCV010000410
Alphaproteobacteria
Methylobacterium ajmalii IIF4SW-B5 [JACWCV]
19693
19777
+
Leu
CAG
[ENA]
¡û
>W2130017676
JACWCV010000733
Alphaproteobacteria
Methylobacterium ajmalii IIF4SW-B5 [JACWCV]
1341
1425
+
Leu
CAG
[ENA]
¡û
>W2130017688
JACWCW010000073
Alphaproteobacteria
Methylorubrum rhodesianum I1-R3 [JACWCW]
12583
12499
-
Leu
CAG
[ENA]
¡û
>W2310012808
BPQE01000031
Alphaproteobacteria
Methylobacterium aerolatum DSM 19013 [BPQE]
92467
92383
-
Leu
CAG
[ENA]
¡û
>W2310012962
BPQI01000019
Alphaproteobacteria
Methylobacterium dankookense DSM 22415 [BPQI]
9818
9734
-
Leu
CAG
[ENA]
¡û
>W2310013092
BPQK01000140
Alphaproteobacteria
Methylobacterium gnaphalii DSM 24027 [BPQK]
2239
2155
-
Leu
CAG
[ENA]
¡û
>W2310013159
BPQM01000060
Alphaproteobacteria
Methylobacterium gregans NBRC 103626 [BPQM]
23759
23843
+
Leu
CAG
[ENA]
¡û
>W2310013264
BPQO01000018
Alphaproteobacteria
Methylobacterium hispanicum DSM 16372 [BPQO]
13006
13090
+
Leu
CAG
[ENA]
¡û
>W2310013415
BPQR01000085
Alphaproteobacteria
Methylobacterium jeotgali LMG 23639 [BPQR]
22841
22925
+
Leu
CAG
[ENA]
¡û
>W2310013586
BPQV01000008
Alphaproteobacteria
Methylobacterium organophilum NBRC 15689 [BPQV]
47557
47473
-
Leu
CAG
[ENA]
¡û
>W2310013645
BPQW01000160
Alphaproteobacteria
Methylobacterium oxalidis DSM 24028 [BPQW]
3367
3283
-
Leu
CAG
[ENA]
¡û
>W2310013898
BPRC01000023
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
3643
3559
-
Leu
CAG
[ENA]
¡û
>W2310013968
BPRE01000006
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
120419
120335
-
Leu
CAG
[ENA]
¡û
>W2310014009
BPRF01000008
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BPRF]
11241
11157
-
Leu
CAG
[ENA]
¡û
>W2310026123
BSPC01000069
Alphaproteobacteria
Labrys miyagiensis NBRC 101365 [BSPC]
33305
33389
+
Leu
CAG
[ENA]
¡û
>W2310026492
BSPP01000004
Alphaproteobacteria
Cypionkella aquatica NBRC 111766 [BSPP]
477753
477837
+
Leu
CAG
[ENA]
¡û
>W1610043192
BAZP01001613
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
183
267
+
Leu
CAG
[ENA]
¡û
>W1610614672
LGIC01000061
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
179658
179742
+
Leu
CAG
[ENA]
¡û
>W1710040352
BAZP01001613
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
183
267
+
Leu
CAG
[ENA]
¡û
>W1710709736
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
29226
29142
-
Leu
CAG
[ENA]
¡û
>W1710709737
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
27584
27500
-
Leu
CAG
[ENA]
¡û
>W1710709875
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12646
12562
-
Leu
CAG
[ENA]
¡û
>W1710709876
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
11004
10920
-
Leu
CAG
[ENA]
¡û
>W1710735806
LGIC01000061
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
179658
179742
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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