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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115137 (48 seq.)
>W1710861695
LMDU01000018
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
99905
99989
+
Leu
CAA
[ENA]
¡û
>W1712102912
NIOE01000010
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
9649
9565
-
Leu
CAA
[ENA]
¡û
>W1712102970
NIOF01000004
Betaproteobacteria
Roseateles aquatilis [NIOF]
310128
310212
+
Leu
CAA
[ENA]
¡û
>W131052503
AMYZ01000014
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
101079
100995
-
Leu
CAA
[ENA]
¡û
>WENV181166593
OEIU01000735
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17643
17559
-
Leu
CAA
[ENA]
¡û
>WENV183697157
OUNJ010024852
[OUNJ] metagenome; soil
210
294
+
Leu
CAA
[ENA]
¡û
>WENV170019919
BBPE01001437
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
21149
21233
+
Leu
CAA
[ENA]
¡û
>WENV170552320
CXWJ01055072
[CXWJ] wastewater metagenome; activated sludge
806
890
+
Leu
CAA
[ENA]
¡û
>WENV170651039
JRYF01000061
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
5004
5088
+
Leu
CAA
[ENA]
¡û
>WENV170651040
JRYF01000062
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1932
1848
-
Leu
CAA
[ENA]
¡û
>WENV170687686
LFRM01205367
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
135
51
-
Leu
CAA
[ENA]
¡û
>C181064541
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
3141017
3140933
-
Leu
CAA
-
¡û
>W1911647486
QAJN01000011
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
51104
51188
+
Leu
CAA
[ENA]
¡û
>W1911701426
QNUI01000014
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
2474
2390
-
Leu
CAA
[ENA]
¡û
>W1911702194
QOAZ01000041
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
14386
14302
-
Leu
CAA
[ENA]
¡û
>SRA1003378
SRR002326.423818
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
99
15
-
Leu
CAA
[SRA]
>W1810475767
QAJF01001041
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
3533
3449
-
Leu
CAA
[ENA]
¡û
>SRA1016109
SRR023846.351260
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
121
-
Leu
CAA
[SRA]
>W2010469115
JAAGOH010000011
Betaproteobacteria
Ideonella sp. TBM-1 [JAAGOH]
45001
45085
+
Leu
CAA
[ENA]
¡û
>W2010686649
JACFXX010000001
Betaproteobacteria
Deefgea sp. CFH1-16 [JACFXX]
724648
724732
+
Leu
CAA
[ENA]
¡û
>W2010686671
JACFXX010000001
Betaproteobacteria
Deefgea sp. CFH1-16 [JACFXX]
1705163
1705247
+
Leu
CAA
[ENA]
¡û
>W2010708648
JACHLP010000005
Betaproteobacteria
Paucibacter oligotrophus S00239 [JACHLP]
5042
4958
-
Leu
CAA
[ENA]
¡û
>W2011235470
QAJN01000011
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
51104
51188
+
Leu
CAA
[ENA]
¡û
>W2011413885
REGR01000007
Betaproteobacteria
bacterium CAVE-375 [REGR]
3946
3862
-
Leu
CAA
[ENA]
¡û
>W2011540235
SCOI01000029
Betaproteobacteria
Burkholderiales bacterium C2 [SCOI]
6133
6049
-
Leu
CAA
[ENA]
¡û
>W2011637390
SMLL01000003
Betaproteobacteria
Ramlibacter rhizophilus CCTCC AB2015357 [SMLL]
453800
453716
-
Leu
CAA
[ENA]
¡û
>W2011648965
SNXE01000004
Betaproteobacteria
Kinneretia asaccharophila DSM 25082 [SNXE]
359897
359981
+
Leu
CAA
[ENA]
¡û
>W2011649689
SNXS01000004
Betaproteobacteria
Paucibacter toxinivorans DSM 16998 [SNXS]
18266
18182
-
Leu
CAA
[ENA]
¡û
>W2012103999
VOID02000341
Betaproteobacteria
Vogesella perlucida DS-28 [VOID]
62016
61932
-
Leu
CAA
[ENA]
¡û
>W2110049760
BMYW01000013
Betaproteobacteria
Vogesella alkaliphila KCTC 32041 [BMYW]
82239
82155
-
Leu
CAA
[ENA]
¡û
>W2110692182
JAIQCM010000008
Betaproteobacteria
Paucibacter aquatile DH15 [JAIQCM]
89339
89423
+
Leu
CAA
[ENA]
¡û
>C211081574
CP049919
Betaproteobacteria
Kinneretia sp. DAIF2 [CP049919]
2415359
2415275
-
Leu
CAA
-
¡û
>W2110718022
JAJAWG010000003
Betaproteobacteria
Deefgea sp. H3-26 [JAJAWG]
312286
312370
+
Leu
CAA
[ENA]
¡û
>W2110718057
JAJAWG010000015
Betaproteobacteria
Deefgea sp. H3-26 [JAJAWG]
29076
28992
-
Leu
CAA
[ENA]
¡û
>W10111505
ADDK01000011
Betaproteobacteria
Azospira oryzae PS [ADDK]
10305
10221
-
Leu
CAA
[ENA]
¡û
>C231494098
CP104562
Betaproteobacteria
Roseateles sp. BIM B-1768 [CP104562]
3504616
3504700
+
Leu
CAA
-
¡û
>W2110784270
WLYT01000001
Betaproteobacteria
Deefgea sp. CFH1-16 [WLYT]
724648
724732
+
Leu
CAA
[ENA]
¡û
>W2110784292
WLYT01000001
Betaproteobacteria
Deefgea sp. CFH1-16 [WLYT]
1705163
1705247
+
Leu
CAA
[ENA]
¡û
>C241253448
CP124551
Betaproteobacteria
Paucibacter aquatile DH15 [CP124551]
2308345
2308261
-
Leu
CAA
-
¡û
>W1511678894
LFDT01000035
Betaproteobacteria
Vogesella sp. EB [LFDT]
25718
25634
-
Leu
CAA
[ENA]
¡û
>W11187686
CAFG01000298
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
23886
23970
+
Leu
CAA
[ENA]
¡û
>C121000549
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3993459
3993543
+
Leu
CAA
[Ensembl]
¡û
>C161036439
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
2616614
2616698
+
Leu
CAA
-
¡û
>C161059541
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
2187848
2187932
+
Leu
CAA
[Ensembl]
¡û
>W121127047
CAFG01000298
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
23886
23970
+
Leu
CAA
[ENA]
¡û
>W1610723480
LMDK01000012
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
646008
645924
-
Leu
CAA
[ENA]
¡û
>W1610724041
LMDU01000018
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
99905
99989
+
Leu
CAA
[ENA]
¡û
>W1710544489
FOAV01000013
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
142920
143004
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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