This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116762 (38 seq.)
>W131098360
AORL01000016
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
47651
47735
+
Leu
CAA
[ENA]
¡û
>WENV180020048
FTCV01001067
[FTCV] metagenome; soil
505
421
-
Leu
CAA
[ENA]
¡û
>WENV183734939
PJUA01000201
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
30325
30241
-
Leu
CAA
[ENA]
¡û
>WENV183734977
PJUA01000312
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
32164
32080
-
Leu
CAA
[ENA]
¡û
>WENV183735917
PJUB01011414
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
243
159
-
Leu
CAA
[ENA]
¡û
>WENV183736268
PJUC01000369
[PJUC] soil metagenome; Soil enriched on filter paper
1154
1070
-
Leu
CAA
[ENA]
¡û
>WENV183736320
PJUC01000696
[PJUC] soil metagenome; Soil enriched on filter paper
5436
5520
+
Leu
CAA
[ENA]
¡û
>C181177433
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
2077474
2077390
-
Leu
CAA
-
¡û
>C181185936
CP029829
Alphaproteobacteria
Azospirillum ramasamyi M2T2B2 [CP029829]
2142632
2142716
+
Leu
CAA
-
¡û
>C191170798
CP039650
Alphaproteobacteria
Azospirillum sp. TSA2s TSA2S [CP039642, CP039645, CP039646, CP039647, CP039648, CP039649, CP039650]
815199
815283
+
Leu
CAA
-
¡û
>W1910612953
LGQT01000147
Alphaproteobacteria
Azospirillum sp. TSH7 [LGQT]
28865
28781
-
Leu
CAA
[ENA]
¡û
>W1910613005
LGQU01000088
Alphaproteobacteria
Azospirillum sp. TSH20 [LGQU]
29455
29371
-
Leu
CAA
[ENA]
¡û
>W1910613114
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
5540242
5540326
+
Leu
CAA
[ENA]
¡û
>W1911247229
NSLI01000001
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
79475
79559
+
Leu
CAA
[ENA]
¡û
>W1810058934
PDKW01000043
Alphaproteobacteria
Azospirillum palustre B2 [PDKW]
2323032
2323116
+
Leu
CAA
[ENA]
¡û
>SRA1015426
SRR023846.52461
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
>SRA1015491
SRR023846.82892
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
>SRA1015985
SRR023846.293907
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
12
-
Leu
CAA
[SRA]
>W2010567513
JAATJE010000001
Alphaproteobacteria
Sphingomonas jejuensis DSM 27651 [JAATJE]
619891
619975
+
Leu
CAA
[ENA]
¡û
>W2010724141
JACIDD010000001
Alphaproteobacteria
Sphingomonas desiccabilis DSM 16792 [JACIDD]
687851
687935
+
Leu
CAA
[ENA]
¡û
>W2010731310
JACIIY010000005
Alphaproteobacteria
Sphingobium wenxiniae JZ-1 [JACIIY]
63196
63112
-
Leu
CAA
[ENA]
¡û
>W2010772716
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
5540242
5540326
+
Leu
CAA
[ENA]
¡û
>W2011070734
NSLI01000001
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
79475
79559
+
Leu
CAA
[ENA]
¡û
>W2011549743
SDPT01000001
Alphaproteobacteria
Sphingomonas desiccabilis CP1D [SDPT]
742992
743076
+
Leu
CAA
[ENA]
¡û
>W2012043870
VITH01000029
Alphaproteobacteria
Azospirillum brasilense BR 11650 [VITH]
9671
9587
-
Leu
CAA
[ENA]
¡û
>W2012081436
VLKK01000003
Alphaproteobacteria
Sphingobium wenxiniae CGMCC 1.7748 [VLKK]
313910
313994
+
Leu
CAA
[ENA]
¡û
>W2012144396
VTTK01000002
Alphaproteobacteria
Azospirillum sp. Sh1 [VTTK]
329491
329575
+
Leu
CAA
[ENA]
¡û
>W2012144600
VTTN01000017
Alphaproteobacteria
Azospirillum lipoferum 59b [VTTN]
68880
68964
+
Leu
CAA
[ENA]
¡û
>W2012329200
WHOS01000031
Alphaproteobacteria
Azospirillum melinis TMCY0552 [WHOS]
68482
68398
-
Leu
CAA
[ENA]
¡û
>C231190994
CP084398
Alphaproteobacteria
Sphingobium sp. CFD-1 [CP084398]
1195994
1195910
-
Leu
CAA
-
¡û
>W2110778408
VUOI01000004
Alphaproteobacteria
Azospirillum sp. INR13 [VUOI]
182611
182527
-
Leu
CAA
[ENA]
¡û
>C241133172
CP049107
Alphaproteobacteria
Rhizorhabdus phycosphaerae MK52 [CP049107]
1658355
1658271
-
Leu
CAA
-
¡û
>C10101259
AP010946
Alphaproteobacteria
Azospirillum sp. B510 [AP010946]
2872146
2872230
+
Leu
CAA
[Ensembl]
¡û
>W1510757061
JACV01000006
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
13605
13521
-
Leu
CAA
[ENA]
¡û
>W1610729645
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
65395
65479
+
Leu
CAA
[ENA]
¡û
>W1710505579
FMTU01000002
Alphaproteobacteria
Sphingobium faniae [FMTU]
415024
415108
+
Leu
CAA
[ENA]
¡û
>W1710575566
FOZG01000002
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
849472
849556
+
Leu
CAA
[ENA]
¡û
>W1710607928
FXAK01000007
Alphaproteobacteria
Azospirillum oryzae [FXAK]
2569409
2569493
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK