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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12107 (60 seq.)
>W1711311988
MASF01000058
Bacillota
Clostridium perfringens [MASF]
20763
20672
-
Ser
GCT
[ENA]
¡û
>W1711507412
MKXR01000002
Bacillota
Clostridium perfringens [MKXR]
400497
400588
+
Ser
GCT
[ENA]
¡û
>WENV180161694
OAVE01003238
[OAVE] human gut metagenome; faeces
1012
1103
+
Ser
GCT
[ENA]
¡û
>WENV180168443
OAVR01000081
[OAVR] human gut metagenome; faeces
15962
16053
+
Ser
GCT
[ENA]
¡û
>WENV180226721
OBBS01000094
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
17227
17318
+
Ser
GCT
[ENA]
¡û
>WENV180226978
OBBT01000098
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
9421
9512
+
Ser
GCT
[ENA]
¡û
>WENV180227886
OBBV01000145
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
22378
22287
-
Ser
GCT
[ENA]
¡û
>WENV180228160
OBBW01000171
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
22378
22287
-
Ser
GCT
[ENA]
¡û
>WENV180444394
OBWZ01004348
[OBWZ] human gut metagenome; faeces
173
82
-
Ser
GCT
[ENA]
¡û
>WENV180556472
OCJS01000084
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
49917
50008
+
Ser
GCT
[ENA]
¡û
>WENV180556738
OCJT01000102
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
25562
25471
-
Ser
GCT
[ENA]
¡û
>WENV180557224
OCJV01000153
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
22458
22367
-
Ser
GCT
[ENA]
¡û
>WENV180557510
OCJW01000134
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
24299
24208
-
Ser
GCT
[ENA]
¡û
>WENV180557688
OCJX01000026
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
181356
181447
+
Ser
GCT
[ENA]
¡û
>WENV180558942
OCKA01000135
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
14391
14482
+
Ser
GCT
[ENA]
¡û
>WENV180559048
OCKB01000002
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
24299
24208
-
Ser
GCT
[ENA]
¡û
>WENV180559399
OCKC01000093
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
63376
63467
+
Ser
GCT
[ENA]
¡û
>WENV180559796
OCKD01000145
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
14391
14482
+
Ser
GCT
[ENA]
¡û
>W08001609
ABDW01000029
Bacillota
Clostridium perfringens E str. JGS1987 [ABDW]
8358
8449
+
Ser
GCT
[ENA]
¡û
>WENV182799286
OJTS01001307
[OJTS] human gut metagenome; human gut
403
312
-
Ser
GCT
[ENA]
¡û
>WENV182804386
OJUT01002029
[OJUT] human gut metagenome; human gut
398
307
-
Ser
GCT
[ENA]
¡û
>WENV182965382
OKWS01000027
[OKWS] human gut metagenome; stool
19694
19603
-
Ser
GCT
[ENA]
¡û
>WENV183083577
OLJC01001385
[OLJC] human gut metagenome; human gut
1001
910
-
Ser
GCT
[ENA]
¡û
>C181118047
CP025501
Bacillota
Clostridium perfringens EHE-NE18 [CP025501]
1026000
1026091
+
Ser
GCT
-
¡û
>PHG14102103
KC237729
Siphoviridae
Clostridium phage vB_CpeS-CP51 TSP4 (KC237729)
36204
36295
+
Ser
GCT
[ENA]
¡û
>W1810178732
PJSH01000002
Bacillota
Clostridium perfringens W1319 [PJSH]
387685
387594
-
Ser
GCT
[ENA]
¡û
>W1810178833
PJSI01000025
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
844
935
+
Ser
GCT
[ENA]
¡û
>W1810178949
PJSK01000012
Bacillota
Clostridium perfringens TAM-NE40 [PJSK]
19764
19673
-
Ser
GCT
[ENA]
¡û
>W1810179008
PJSK01000028
Bacillota
Clostridium perfringens TAM-NE40 [PJSK]
4041
4132
+
Ser
GCT
[ENA]
¡û
>W1810179034
PJSL01000001
Bacillota
Clostridium perfringens SOM-NE34 [PJSL]
3009309
3009400
+
Ser
GCT
[ENA]
¡û
>W1810179194
PJSN01000001
Bacillota
Clostridium perfringens 37 [PJSN]
148923
149014
+
Ser
GCT
[ENA]
¡û
>W1810179354
PJSP01000055
Bacillota
Clostridium perfringens SAF-1 [PJSP]
177418
177327
-
Ser
GCT
[ENA]
¡û
>W1810179469
PJSQ01000007
Bacillota
Clostridium perfringens Pennington [PJSQ]
123318
123409
+
Ser
GCT
[ENA]
¡û
>W1810179822
PJSV01000008
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
123992
124083
+
Ser
GCT
[ENA]
¡û
>W1810179984
PJSX01000005
Bacillota
Clostridium perfringens K473 [PJSX]
21497
21406
-
Ser
GCT
[ENA]
¡û
>W1810180051
PJSY01000021
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
22045
21954
-
Ser
GCT
[ENA]
¡û
>W1810180134
PJSZ01000005
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
18441
18350
-
Ser
GCT
[ENA]
¡û
>W1810180196
PJTA01000001
Bacillota
Clostridium perfringens FC2 [PJTA]
636717
636626
-
Ser
GCT
[ENA]
¡û
>W1810180289
PJTB01000002
Bacillota
Clostridium perfringens EUR-NE15 [PJTB]
532662
532753
+
Ser
GCT
[ENA]
¡û
>W1810180813
PJTH01000030
Bacillota
Clostridium perfringens Warren [PJTH]
21945
21854
-
Ser
GCT
[ENA]
¡û
>W1810180874
PJTI01000006
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
18441
18350
-
Ser
GCT
[ENA]
¡û
>W1810180964
PJTJ01000068
Bacillota
Clostridium perfringens T3381 [PJTJ]
2069
1978
-
Ser
GCT
[ENA]
¡û
>W1810181118
PJTL01000010
Bacillota
Clostridium perfringens TAM-NE38 [PJTL]
433068
433159
+
Ser
GCT
[ENA]
¡û
>W1810181125
PJTL01000026
Bacillota
Clostridium perfringens TAM-NE38 [PJTL]
10768
10677
-
Ser
GCT
[ENA]
¡û
>W1810181143
PJTM01000003
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
36875
36966
+
Ser
GCT
[ENA]
¡û
>W1810181753
PJUV01000012
Bacillota
Clostridium perfringens SYD-NE41 [PJUV]
1393620
1393529
-
Ser
GCT
[ENA]
¡û
>W2010292654
CABPRN010000001
Bacillota
Clostridium perfringens Q041.2 [CABPRN]
1414202
1414111
-
Ser
GCT
[ENA]
¡û
>W2010500772
JAALMI010000027
Bacillota
Clostridium perfringens CP-31 [JAALMI]
27763
27672
-
Ser
GCT
[ENA]
¡û
>W2010501453
JAALMT010000004
Bacillota
Clostridium perfringens CP-20 [JAALMT]
57586
57677
+
Ser
GCT
[ENA]
¡û
>W2010963288
NGVT01000015
Bacillota
Clostridium perfringens A JS2202 [NGVT]
75522
75613
+
Ser
GCT
[ENA]
¡û
>W2010963374
NGVU01000017
Bacillota
Clostridium perfringens A JS5388 [NGVU]
24562
24653
+
Ser
GCT
[ENA]
¡û
>W2012014998
VFFA01000029
Bacillota
Clostridium perfringens LLY_Tpel17 [VFFA]
121872
121963
+
Ser
GCT
[ENA]
¡û
>W2012109194
VOVJ01000023
Bacillota
Clostridium perfringens TAMU [VOVJ]
21723
21632
-
Ser
GCT
[ENA]
¡û
>C231143763
CP075927
Bacillota
Clostridium perfringens CPI 63K-r5 [CP075927]
2738226
2738135
-
Ser
GCT
-
¡û
>C231577398
CP116430
Bacillota
Clostridium perfringens D NCTC8346 [CP116430]
480277
480368
+
Ser
GCT
-
¡û
>C231577400
CP116430
Bacillota
Clostridium perfringens D NCTC8346 [CP116430]
1216843
1216934
+
Ser
GCT
-
¡û
>C161021593
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
2373087
2372996
-
Ser
GCT
-
¡û
>W121001720
ADLP01000010
Bacillota
Clostridium perfringens WAL-14572 [ADLP]
185015
184924
-
Ser
GCT
[ENA]
¡û
>W1610638947
LIYI01000009
Bacillota
Clostridium perfringens CP4 [LIYI]
123139
123230
+
Ser
GCT
[ENA]
¡û
>W1710774841
LIYI01000009
Bacillota
Clostridium perfringens CP4 [LIYI]
123139
123230
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK