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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121655 (88 seq.)
>W1710785724
LJIC01000091
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
8063
7979
-
Leu
TAG
[ENA]
¡û
>W1710864223
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
1777662
1777746
+
Leu
TAG
[ENA]
¡û
>W1711169184
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
193788
193704
-
Leu
TAG
[ENA]
¡û
>W131222241
AUBC01000008
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
21585
21501
-
Leu
TAG
[ENA]
¡û
>W1711502234
MKSM01000018
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
5340
5256
-
Leu
TAG
[ENA]
¡û
>W1711505922
MKVY01000038
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
463477
463561
+
Leu
TAG
[ENA]
¡û
>W1711505987
MKWA01000002
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
412698
412614
-
Leu
TAG
[ENA]
¡û
>W1711783530
MVOD01000020
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
21243
21327
+
Leu
TAG
[ENA]
¡û
>W1711795371
MWPQ01000039
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
81407
81323
-
Leu
TAG
[ENA]
¡û
>W131166447
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
59194
59110
-
Leu
TAG
[ENA]
¡û
>W131175667
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
742295
742379
+
Leu
TAG
[ENA]
¡û
>W131226875
AUES01000004
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
151021
151105
+
Leu
TAG
[ENA]
¡û
>C014946
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2482912
2482828
-
Leu
TAG
[Ensembl]
¡û
>C015379
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2085621
2085537
-
Leu
TAG
[Ensembl]
¡û
>C018890
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
2593815
2593899
+
Leu
TAG
[Ensembl]
¡û
>C019008
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3356522
3356438
-
Leu
TAG
[Ensembl]
¡û
>C019039
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2939436
2939520
+
Leu
TAG
[Ensembl]
¡û
>w013002
AAMY01000019
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
57859
57943
+
Leu
TAG
[ENA]
¡û
>WENV180363852
OBNZ01012955
[OBNZ] marine metagenome; ENVO:00002010
521
437
-
Leu
TAG
[ENA]
¢þ
>WENV180367184
OBOE01019702
[OBOE] marine metagenome; ENVO:00002010
285
369
+
Leu
TAG
[ENA]
¢þ
>WENV180390556
OBPL01000835
[OBPL] marine metagenome; Sterivex filter
1626
1542
-
Leu
TAG
[ENA]
¢þ
>WENV180391436
OBPN01001294
[OBPN] marine metagenome; seawater
711
795
+
Leu
TAG
[ENA]
¢þ
>WENV180396819
OBPW01007490
[OBPW] marine metagenome; seawater
357
273
-
Leu
TAG
[ENA]
¢þ
>WENV180636787
OCRF01062320
[OCRF] marine metagenome; niskin bottle
258
174
-
Leu
TAG
[ENA]
¢þ
>WENV180690974
OCZS010042933
[OCZS] soil metagenome; soil
183
267
+
Leu
TAG
[ENA]
¢þ
>WENV181234776
OFEU01007660
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
361
445
+
Leu
TAG
[ENA]
¢þ
>WENV181307929
OFIS01000041
[OFIS] sludge metagenome; sludge
158709
158625
-
Leu
TAG
[ENA]
¢þ
>WENV181311947
OFJB01025010
[OFJB] sludge metagenome; sludge
814
898
+
Leu
TAG
[ENA]
¢þ
>WENV181401908
OFTX01019191
[OFTX] sludge metagenome; sludge
273
357
+
Leu
TAG
[ENA]
¢þ
>WENV181401916
OFTX01020805
[OFTX] sludge metagenome; sludge
599
515
-
Leu
TAG
[ENA]
¢þ
>WENV181402585
OFTY01006074
[OFTY] sludge metagenome; sludge
1255
1339
+
Leu
TAG
[ENA]
¢þ
>W08007835
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1822654
1822738
+
Leu
TAG
[ENA]
¡û
>W141223320
BADD01000501
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
6945
6861
-
Leu
TAG
[ENA]
¡û
>WENV183619794
OOFQ01049653
[OOFQ] marine metagenome; seawater
190
274
+
Leu
TAG
[ENA]
¢þ
>WENV183636440
OOKD01001298
[OOKD] human gut metagenome; Skin biopsy
2414
2498
+
Leu
TAG
[ENA]
¢þ
>WENV183680413
ORMF010178620
[ORMF] groundwater metagenome; groundwater
163
247
+
Leu
TAG
[ENA]
¢þ
>WENV183740656
PJUF01005503
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
315
399
+
Leu
TAG
[ENA]
¢þ
>WENV183745193
PJUL01005116
[PJUL] feces metagenome; Chicken feces enriched on filter paper
720
636
-
Leu
TAG
[ENA]
¢þ
>WENV170003672
AGTN01413771
[AGTN] bioreactor metagenome; poplar biomass
244
328
+
Leu
TAG
[ENA]
¢þ
>WENV170298656
CESF01166960
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
493
409
-
Leu
TAG
[ENA]
¢þ
>WENV170650115
JRYD01012127
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
11508
11592
+
Leu
TAG
[ENA]
¢þ
>WENV170652265
JRYH01000430
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
9349
9265
-
Leu
TAG
[ENA]
¢þ
>WENV170653091
JRYI01002863
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1863
1947
+
Leu
TAG
[ENA]
¢þ
>WENV170709014
LNFM01000069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
295455
295371
-
Leu
TAG
[ENA]
¢þ
>WENV170709230
LNFM01000206
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
263780
263696
-
Leu
TAG
[ENA]
¢þ
>WENV170710468
LNFM01001835
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9576
9660
+
Leu
TAG
[ENA]
¢þ
>WENV170884383
MDTC01182949
[MDTC] marine metagenome; seawater
13542
13458
-
Leu
TAG
[ENA]
¢þ
>WENV170961885
MLJW01004518
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1323
1239
-
Leu
TAG
[ENA]
¢þ
>WENV170984401
MWVV01269239
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
238
154
-
Leu
TAG
[ENA]
¢þ
>C181041874
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3271689
3271605
-
Leu
TAG
-
¡û
>C181041920
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3296580
3296496
-
Leu
TAG
-
¡û
>C191171947
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
2268602
2268686
+
Leu
TAG
-
¡û
>W09103022
AAIS01000006
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
143348
143432
+
Leu
TAG
[ENA]
¡û
>W09104373
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
609137
609053
-
Leu
TAG
[ENA]
¡û
>W09104412
AALR01000004
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
223995
223911
-
Leu
TAG
[ENA]
¡û
>W09107578
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1552495
1552411
-
Leu
TAG
[ENA]
¡û
>W1910182845
BJNF01000050
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
31667
31583
-
Leu
TAG
[ENA]
¡û
>W1910548951
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
1118635
1118551
-
Leu
TAG
[ENA]
¡û
>C09108134
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1822340
1822424
+
Leu
TAG
-
¡û
>W1911219131
NRSI01000001
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
234483
234567
+
Leu
TAG
[ENA]
¡û
>W1911653502
QDFX01000002
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
204422
204338
-
Leu
TAG
[ENA]
¡û
>W1911760571
QWVU01000030
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
68978
68894
-
Leu
TAG
[ENA]
¡û
>W1911809174
QYYC01000036
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
21284
21368
+
Leu
TAG
[ENA]
¡û
>W1810576969
QENW01000013
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
116730
116814
+
Leu
TAG
[ENA]
¡û
>W1810679430
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
256779
256695
-
Leu
TAG
[ENA]
¡û
>W1810706687
QMKH01000006
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
163833
163917
+
Leu
TAG
[ENA]
¡û
>W1810720674
QNRK01000023
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
46598
46682
+
Leu
TAG
[ENA]
¡û
>W1810784352
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
36275
36359
+
Leu
TAG
[ENA]
¡û
>W1810787489
QRDT01000001
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
12835
12919
+
Leu
TAG
[ENA]
¡û
>W1810789376
QRGO01000003
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
303898
303814
-
Leu
TAG
[ENA]
¡û
>W1810884386
QUMP01000001
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
12835
12919
+
Leu
TAG
[ENA]
¡û
>W10110079
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
37879
37963
+
Leu
TAG
[ENA]
¡û
>W10112838
ADFI01000030
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
17214
17130
-
Leu
TAG
[ENA]
¡û
>C10110770
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3567960
3567876
-
Leu
TAG
[Ensembl]
¡û
>C10112213
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
2318175
2318091
-
Leu
TAG
[Ensembl]
¡û
>W11112516
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
37879
37963
+
Leu
TAG
[ENA]
¡û
>C11116284
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2303267
2303183
-
Leu
TAG
[Ensembl]
¡û
>W11116065
ADFI01000030
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
17214
17130
-
Leu
TAG
[ENA]
¡û
>C11118751
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2671639
2671723
+
Leu
TAG
[Ensembl]
¡û
>W1511705981
LGTB01000004
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
8981
9065
+
Leu
TAG
[ENA]
¡û
>C121003004
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2302146
2302062
-
Leu
TAG
-
¡û
>W1610649530
LJIC01000091
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
8063
7979
-
Leu
TAG
[ENA]
¡û
>W1610726569
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
1777662
1777746
+
Leu
TAG
[ENA]
¡û
>W1610978979
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
193788
193704
-
Leu
TAG
[ENA]
¡û
>W1710505285
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
486621
486705
+
Leu
TAG
[ENA]
¡û
>W1710536656
FNTI01000002
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
65446
65530
+
Leu
TAG
[ENA]
¡û
>W1710540673
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
856505
856421
-
Leu
TAG
[ENA]
¡û
>W1710568417
FOTP01000002
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
49440
49524
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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