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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121854 (29 seq.)
>W1710920814
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
>W131187897
ASAD01000001
Gammaproteobacteria
Marinobacter lipolyticus SM19 [ASAD]
20680
20596
-
Leu
TAG
[ENA]
¡û
>W131222289
AUBD01000007
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
16485
16401
-
Leu
TAG
[ENA]
¡û
>WENV180293769
OBIY01001031
[OBIY] beach sand metagenome; beach sand
496
580
+
Leu
TAG
[ENA]
¡û
>WENV181416193
OGCL01059756
[OGCL] hot springs metagenome; Hot spring water
894
978
+
Leu
TAG
[ENA]
¡û
>W141148243
AWXU01000020
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
112156
112240
+
Leu
TAG
[ENA]
¡û
>WENV182546802
OJBP01004148
[OJBP] seawater metagenome; Sea water
1215
1131
-
Leu
TAG
[ENA]
¡û
>WENV183513612
OMKS01006298
[OMKS] sediment metagenome; hot spring sediment
4948
4864
-
Leu
TAG
[ENA]
¡û
>WENV170577903
FSSH01002527
[FSSH] freshwater metagenome; drinking water
3393
3309
-
Leu
TAG
[ENA]
¡û
>WENV170653090
JRYI01002861
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
214
298
+
Leu
TAG
[ENA]
¡û
>WENV170722631
LSQX01236243
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
529
613
+
Leu
TAG
[ENA]
¡û
>WENV170806087
MDSW01076176
[MDSW] marine metagenome; seawater
5120
5036
-
Leu
TAG
[ENA]
¡û
>C181225363
LT906457
Gammaproteobacteria
Legionella spiritensis NCTC11990 [LT906457]
899497
899581
+
Leu
TAG
-
¡û
>C191120195
CP034142
Gammaproteobacteria
Marinobacter sp. NP-4[2019] [CP034142]
2760128
2760044
-
Leu
TAG
-
¡û
>W1910826177
MWQP01000002
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
185115
185199
+
Leu
TAG
[ENA]
¡û
>W1911245528
NSKD01000002
Gammaproteobacteria
Halovibrio sp. YL5-2 [NSKD]
485456
485372
-
Leu
TAG
[ENA]
¡û
>C151001109
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
1509309
1509225
-
Leu
TAG
[Ensembl]
¡û
>W2010148030
CAAAIW010000011
Gammaproteobacteria
Legionella yabuuchiae OA1-2 [CAAAIW]
86256
86172
-
Leu
TAG
[ENA]
¡û
>W2010148268
CAAAJC010000002
Gammaproteobacteria
Legionella sp. W10-070 [CAAAJC]
69022
68938
-
Leu
TAG
[ENA]
¡û
>W2010919001
MWQP01000002
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
185115
185199
+
Leu
TAG
[ENA]
¡û
>W2011070429
NSKD01000002
Gammaproteobacteria
Halovibrio sp. YL5-2 [NSKD]
485456
485372
-
Leu
TAG
[ENA]
¡û
>W2011627133
SMAF01000001
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [SMAF]
185246
185330
+
Leu
TAG
[ENA]
¡û
>W2012376981
WMFD01000003
Gammaproteobacteria
Halomonas sp. 22501_18_FS [WMFD]
168425
168341
-
Leu
TAG
[ENA]
¡û
>W2012430764
WSSA01000002
Gammaproteobacteria
Marinobacter sp. JSM 1782161 [WSSA]
986620
986536
-
Leu
TAG
[ENA]
¡û
>W2110664225
JAHZIL010000003
Gammaproteobacteria
Marinobacter sp. F4218 [JAHZIL]
131105
131021
-
Leu
TAG
[ENA]
¡û
>C201281828
CP054689
Gammaproteobacteria
Ectothiorhodospiraceae bacterium 2226 [CP054689]
274357
274273
-
Leu
TAG
-
¡û
>C231123736
CP071785
Gammaproteobacteria
Marinobacter sp. CA1 [CP071785]
2502516
2502432
-
Leu
TAG
-
¡û
>W2110754419
NRSK01000045
Gammaproteobacteria
Ectothiorhodospira mobilis DSM 237 [NRSK]
2224
2308
+
Leu
TAG
[ENA]
¡û
>W1610778712
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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