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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124580 (119 seq.)
>W1711092909
LTEN01000064
Actinomycetota
Rothia sp. HMSC065B04 [LTEN]
182597
182681
+
Tyr
GTA
[ENA]
¡û
>W1711093396
LTEY01000019
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
77829
77745
-
Tyr
GTA
[ENA]
¡û
>W1711095381
LTGT01000041
Actinomycetota
Rothia sp. HMSC069C03 [LTGT]
43050
43134
+
Tyr
GTA
[ENA]
¡û
>W1711099650
LTKQ01000061
Actinomycetota
Rothia sp. HMSC078H08 [LTKQ]
7693
7609
-
Tyr
GTA
[ENA]
¡û
>W1711106954
LTSI01000050
Actinomycetota
Rothia sp. HMSC061C12 [LTSI]
151985
151901
-
Tyr
GTA
[ENA]
¡û
>W1711108454
LTTT01000024
Actinomycetota
Rothia sp. HMSC066H02 [LTTT]
757
841
+
Tyr
GTA
[ENA]
¡û
>W1711109216
LTUL01000057
Actinomycetota
Rothia sp. HMSC076D04 [LTUL]
94392
94308
-
Tyr
GTA
[ENA]
¡û
>W1711110551
LTVR01000006
Actinomycetota
Rothia sp. HMSC072E10 [LTVR]
83399
83483
+
Tyr
GTA
[ENA]
¡û
>W1711110661
LTVT01000023
Actinomycetota
Rothia sp. HMSC071C12 [LTVT]
151035
150951
-
Tyr
GTA
[ENA]
¡û
>W1711111150
LTWE01000055
Actinomycetota
Rothia sp. HMSC061E04 [LTWE]
225652
225568
-
Tyr
GTA
[ENA]
¡û
>W1711111437
LTWL01000051
Actinomycetota
Rothia sp. HMSC068E02 [LTWL]
13021
13105
+
Tyr
GTA
[ENA]
¡û
>W1711112108
LTXD01000004
Actinomycetota
Rothia sp. HMSC066G02 [LTXD]
42531
42615
+
Tyr
GTA
[ENA]
¡û
>W1711112543
LTXN01000022
Actinomycetota
Rothia sp. HMSC073B08 [LTXN]
131828
131744
-
Tyr
GTA
[ENA]
¡û
>W1711112747
LTXR01000077
Actinomycetota
Rothia sp. HMSC069C04 [LTXR]
7481
7397
-
Tyr
GTA
[ENA]
¡û
>W1711113311
LTYF01000006
Actinomycetota
Micrococcus sp. HMSC067E09 [LTYF]
9765
9849
+
Tyr
GTA
[ENA]
¡û
>W1711281822
LZMM01000050
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
134789
134873
+
Tyr
GTA
[ENA]
¡û
>W1711372171
MDSS02000041
Actinomycetota
Nesterenkonia sp. PF2B19 [MDSS]
20376
20292
-
Tyr
GTA
[ENA]
¡û
>W1711425173
MIEU01000010
Actinomycetota
Tersicoccus sp. Bi-70 [MIEU]
126107
126191
+
Tyr
GTA
[ENA]
¡û
>W1711491804
MKJW01000087
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
30681
30599
-
Tyr
GTA
[ENA]
¡û
>W1711667009
MRDE01000006
Actinomycetota
Tersicoccus phoenicis [MRDE]
14256
14172
-
Tyr
GTA
[ENA]
¡û
>W1711719333
MTIC01000013
Actinomycetota
Sinomonas mesophila [MTIC]
103193
103275
+
Tyr
GTA
[ENA]
¡û
>W131098123
AORC01000015
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
93837
93753
-
Tyr
GTA
[ENA]
¡û
>WENV180004239
FLRR01034107
[FLRR] metagenome; saliva
69
151
+
Tyr
GTA
[ENA]
¢þ
>WENV180006144
FLRX01209634
[FLRX] metagenome; saliva
113
195
+
Tyr
GTA
[ENA]
¢þ
>WENV180007247
FLRZ01262056
[FLRZ] metagenome; saliva
29
111
+
Tyr
GTA
[ENA]
¢þ
>WENV180010478
FLSD01000970
[FLSD] metagenome; saliva
4195
4277
+
Tyr
GTA
[ENA]
¢þ
>WENV180011150
FLSI01219609
[FLSI] metagenome; saliva
447
365
-
Tyr
GTA
[ENA]
¢þ
>WENV180142129
OATV01002068
[OATV] human gut metagenome; faeces
1844
1926
+
Tyr
GTA
[ENA]
¢þ
>WENV180143866
OATY01001409
[OATY] human gut metagenome; faeces
665
747
+
Tyr
GTA
[ENA]
¢þ
>WENV180148240
OAUJ01000368
[OAUJ] human gut metagenome; faeces
1936
1854
-
Tyr
GTA
[ENA]
¢þ
>WENV180168323
OAVQ01001481
[OAVQ] human gut metagenome; faeces
1061
979
-
Tyr
GTA
[ENA]
¢þ
>WENV180168453
OAVR01000104
[OAVR] human gut metagenome; faeces
7104
7022
-
Tyr
GTA
[ENA]
¢þ
>WENV180457067
OBXT01005039
[OBXT] human gut metagenome; faeces
681
599
-
Tyr
GTA
[ENA]
¢þ
>WENV180488974
OBZR01003923
[OBZR] human gut metagenome; faeces
1033
1115
+
Tyr
GTA
[ENA]
¢þ
>WENV180549809
OCIZ01000334
[OCIZ] human oral metagenome; human oral
9135
9053
-
Tyr
GTA
[ENA]
¢þ
>WENV180598868
OCPN01000657
[OCPN] human gut metagenome; faeces
6017
5935
-
Tyr
GTA
[ENA]
¢þ
>WENV180704622
ODEJ01000002
[ODEJ] human metagenome; G_DNA_Tongue dorsum
157466
157384
-
Tyr
GTA
[ENA]
¢þ
>WENV180763509
ODIA01001311
[ODIA] human metagenome; G_DNA_Tongue dorsum
6149
6231
+
Tyr
GTA
[ENA]
¢þ
>WENV180791461
ODIU01002255
[ODIU] human metagenome; G_DNA_Buccal mucosa
109
27
-
Tyr
GTA
[ENA]
¢þ
>WENV180803190
ODJE01055643
[ODJE] human metagenome; G_DNA_Tongue dorsum
55
137
+
Tyr
GTA
[ENA]
¢þ
>WENV180853932
ODKX01000275
[ODKX] human metagenome; G_DNA_Tongue dorsum
9928
9846
-
Tyr
GTA
[ENA]
¢þ
>WENV180854209
ODKX01001395
[ODKX] human metagenome; G_DNA_Tongue dorsum
8260
8342
+
Tyr
GTA
[ENA]
¢þ
>WENV180864525
ODLH01057142
[ODLH] human metagenome; G_DNA_Tongue dorsum
400
482
+
Tyr
GTA
[ENA]
¢þ
>WENV180887366
ODMI01000450
[ODMI] human metagenome; G_DNA_Buccal mucosa
5589
5507
-
Tyr
GTA
[ENA]
¢þ
>WENV180917039
ODTD01003721
[ODTD] human metagenome; G_DNA_Tongue dorsum
3771
3689
-
Tyr
GTA
[ENA]
¢þ
>WENV180927583
ODTM01001458
[ODTM] human metagenome; G_DNA_Supragingival plaque
6970
6888
-
Tyr
GTA
[ENA]
¢þ
>WENV180931706
ODTP01008321
[ODTP] human metagenome; G_DNA_Tongue dorsum
3078
3160
+
Tyr
GTA
[ENA]
¢þ
>WENV180937344
ODTV01083491
[ODTV] human metagenome; G_DNA_Buccal mucosa
184
266
+
Tyr
GTA
[ENA]
¢þ
>WENV180948601
ODUG01002324
[ODUG] human metagenome; G_DNA_Tongue dorsum
11595
11677
+
Tyr
GTA
[ENA]
¢þ
>WENV180954544
ODUJ01003484
[ODUJ] human metagenome; G_DNA_Tongue dorsum
3418
3500
+
Tyr
GTA
[ENA]
¢þ
>WENV180978533
ODVA01000041
[ODVA] human metagenome; G_DNA_Buccal mucosa
7040
6958
-
Tyr
GTA
[ENA]
¢þ
>WENV180985724
ODVJ01013547
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1349
1431
+
Tyr
GTA
[ENA]
¢þ
>WENV180988062
ODVL01000072
[ODVL] human metagenome; G_DNA_Tongue dorsum
24259
24177
-
Tyr
GTA
[ENA]
¢þ
>WENV181013686
ODWN01002630
[ODWN] human metagenome; G_DNA_Tongue dorsum
7522
7440
-
Tyr
GTA
[ENA]
¢þ
>WENV181020931
ODWV01000888
[ODWV] human metagenome; G_DNA_Tongue dorsum
5331
5413
+
Tyr
GTA
[ENA]
¢þ
>WENV181020932
ODWV01000889
[ODWV] human metagenome; G_DNA_Tongue dorsum
5406
5488
+
Tyr
GTA
[ENA]
¢þ
>WENV181037730
ODXQ01000004
[ODXQ] human metagenome; G_DNA_Tongue dorsum
55877
55959
+
Tyr
GTA
[ENA]
¢þ
>WENV181045916
ODXW01003025
[ODXW] human metagenome; G_DNA_Tongue dorsum
6220
6302
+
Tyr
GTA
[ENA]
¢þ
>WENV181046125
ODXW01008194
[ODXW] human metagenome; G_DNA_Tongue dorsum
2282
2364
+
Tyr
GTA
[ENA]
¢þ
>WENV181051547
ODYE01000230
[ODYE] human metagenome; G_DNA_Tongue dorsum
5818
5736
-
Tyr
GTA
[ENA]
¢þ
>WENV181065661
ODYV01000002
[ODYV] human metagenome; G_DNA_Buccal mucosa
48809
48891
+
Tyr
GTA
[ENA]
¢þ
>WENV181069507
ODZZ01070478
[ODZZ] human metagenome; G_DNA_Tongue dorsum
346
264
-
Tyr
GTA
[ENA]
¢þ
>WENV181103008
OECT01019226
[OECT] human metagenome; G_DNA_Tongue dorsum
991
909
-
Tyr
GTA
[ENA]
¢þ
>WENV181113922
OEEO01000010
[OEEO] human metagenome; G_DNA_Supragingival plaque
173760
173678
-
Tyr
GTA
[ENA]
¢þ
>WENV181124643
OEFT01000319
[OEFT] human metagenome; G_DNA_Tongue dorsum
17635
17553
-
Tyr
GTA
[ENA]
¢þ
>WENV181128980
OEFX01001633
[OEFX] human metagenome; G_DNA_Tongue dorsum
6009
6091
+
Tyr
GTA
[ENA]
¢þ
>WENV181138949
OEGN01001822
[OEGN] human metagenome; G_DNA_Tongue dorsum
5406
5488
+
Tyr
GTA
[ENA]
¢þ
>WENV181141483
OEGT01005876
[OEGT] human metagenome; G_DNA_Throat
2334
2416
+
Tyr
GTA
[ENA]
¢þ
>WENV181218075
OFCL01006084
[OFCL] metagenome; Human gut stool
588
670
+
Tyr
GTA
[ENA]
¢þ
>WENV181219148
OFCN01006918
[OFCN] metagenome; Human gut stool
1209
1127
-
Tyr
GTA
[ENA]
¢þ
>WENV181494908
OGGB01019226
[OGGB] metagenome; Human gut stool
707
625
-
Tyr
GTA
[ENA]
¢þ
>WENV182539840
OIXV01020503
[OIXV] human gut metagenome; faeces
931
1013
+
Tyr
GTA
[ENA]
¢þ
>C08005749
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
612499
612583
+
Tyr
GTA
[Ensembl]
¡û
>W09135385
ACVO01000015
Actinomycetota
Rothia mucilaginosa ATCC 25296 [ACVO]
181620
181704
+
Tyr
GTA
[ENA]
¡û
>C181055962
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
1214954
1214871
-
Tyr
GTA
-
¡û
>C181187296
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
758285
758368
+
Tyr
GTA
-
¡û
>C191051307
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
1812349
1812432
+
Tyr
GTA
-
¡û
>C191174088
CP040019
Actinomycetota
Micrococcus luteus AS2 [CP040019]
1176493
1176575
+
Tyr
GTA
-
¡û
>C191211006
LR134409
Actinomycetota
Kocuria rhizophila NCTC8340 [LR134409]
2207564
2207481
-
Tyr
GTA
-
¡û
>W141563788
JIAG01000001
Actinomycetota
Haematomicrobium sanguinis DSM 21259 [JIAG]
179681
179597
-
Tyr
GTA
[ENA]
¡û
>W1910182079
BJMO01000021
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
21962
21879
-
Tyr
GTA
[ENA]
¡û
>W1910636701
LOMZ01000001
Actinomycetota
Kocuria flava S43 [LOMZ]
1829970
1830052
+
Tyr
GTA
[ENA]
¡û
>W1910941560
NJFJ02000001
Actinomycetota
Micrococcus sp. FDAARGOS_333 [NJFJ]
2462585
2462502
-
Tyr
GTA
[ENA]
¡û
>W1911114627
NOIS01000001
Actinomycetota
Kocuria sp. 36 [NOIS]
319985
320069
+
Tyr
GTA
[ENA]
¡û
>W1911149972
NPGE01000002
Actinomycetota
Kocuria varians 80 [NPGE]
139292
139209
-
Tyr
GTA
[ENA]
¡û
>W1911532914
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
922564
922481
-
Tyr
GTA
[ENA]
¡û
>W1911595563
PNGL01000001
Actinomycetota
Micrococcus lylae UMB0955 [PNGL]
119550
119467
-
Tyr
GTA
[ENA]
¡û
>W1810197084
PNJG01000131
Actinomycetota
Kocuria tytonis 442 [PNJG]
2527
2444
-
Tyr
GTA
[ENA]
¡û
>W1810700973
QMDP01000093
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
2125
2207
+
Tyr
GTA
[ENA]
¡û
>W11104618
ACSB01000005
Actinomycetota
Rothia mucilaginosa M508 [ACSB]
116419
116503
+
Tyr
GTA
[ENA]
¡û
>W1511398251
JTDL01000138
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
52165
52081
-
Tyr
GTA
[ENA]
¡û
>W1511440047
JUOQ01000062
Actinomycetota
Rothia mucilaginosa 902_RMUC [JUOQ]
7439
7355
-
Tyr
GTA
[ENA]
¡û
>W1511449783
JVBL01000102
Actinomycetota
Rothia mucilaginosa 574_RMUC [JVBL]
7108
7024
-
Tyr
GTA
[ENA]
¡û
>W1511454023
JVFS01000016
Actinomycetota
Rothia mucilaginosa 473_RMUC [JVFS]
190671
190755
+
Tyr
GTA
[ENA]
¡û
>W1511464613
JVQB01001538
Actinomycetota
Rothia mucilaginosa 204_RMUC [JVQB]
42620
42704
+
Tyr
GTA
[ENA]
¡û
>W1511465795
JVRG01000013
Actinomycetota
Rothia mucilaginosa 175_RMUC [JVRG]
107848
107932
+
Tyr
GTA
[ENA]
¡û
>W1511467071
JVSP01000002
Actinomycetota
Rothia mucilaginosa 141_RMUC [JVSP]
196867
196951
+
Tyr
GTA
[ENA]
¡û
>W1511467228
JVST01000010
Actinomycetota
Rothia mucilaginosa 138_RMUC [JVST]
41920
42004
+
Tyr
GTA
[ENA]
¡û
>W1511471951
JVYQ01000019
Actinomycetota
Rothia mucilaginosa 1211_RMUC [JVYQ]
41846
41930
+
Tyr
GTA
[ENA]
¡û
>W1511638478
LDNX01000138
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
3197
3279
+
Tyr
GTA
[ENA]
¡û
>W1511681636
LFIY01000011
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
36035
35951
-
Tyr
GTA
[ENA]
¡û
>W11176744
AFXQ01000003
Actinomycetota
Citricoccus sp. CH26A [AFXQ]
185543
185627
+
Tyr
GTA
[ENA]
¡û
>W11177870
AGBX01000008
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
29163
29079
-
Tyr
GTA
[ENA]
¡û
>C161002126
AP014938
Actinomycetota
Rothia mucilaginosa NUM-Rm6536 [AP014938]
1436328
1436412
+
Tyr
GTA
[Ensembl]
¡û
>C161054294
CP013254
Actinomycetota
Kocuria flava HO-9041 [CP013254]
3208720
3208638
-
Tyr
GTA
[Ensembl]
¡û
>C161072581
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
1316489
1316407
-
Tyr
GTA
-
¡û
>C161073222
CP014518
Actinomycetota
Sinomonas atrocyanea KCTC 3377 [CP014518]
3363393
3363309
-
Tyr
GTA
[Ensembl]
¡û
>C161106421
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
13810
13894
+
Tyr
GTA
-
¡û
>W1610112345
CZJU01000094
Actinomycetota
Kocuria salsicia [CZJU]
3893
3809
-
Tyr
GTA
[ENA]
¡û
>W1610112443
CZJW01000042
Actinomycetota
Kocuria rhizophila [CZJW]
104185
104101
-
Tyr
GTA
[ENA]
¡û
>W1610590125
LDRE01000039
Actinomycetota
Rothia kristinae [LDRE]
6950
7034
+
Tyr
GTA
[ENA]
¡û
>W1610590201
LDRG01000020
Actinomycetota
Rothia kristinae [LDRG]
6989
7073
+
Tyr
GTA
[ENA]
¡û
>W1610590359
LDRJ01000180
Actinomycetota
Rothia kristinae [LDRJ]
1093
1009
-
Tyr
GTA
[ENA]
¡û
>W1611041107
LZMM01000050
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
134789
134873
+
Tyr
GTA
[ENA]
¡û
>W1710115049
CZJU01000094
Actinomycetota
Kocuria salsicia [CZJU]
3893
3809
-
Tyr
GTA
[ENA]
¡û
>W1710115147
CZJW01000042
Actinomycetota
Kocuria rhizophila [CZJW]
104185
104101
-
Tyr
GTA
[ENA]
¡û
>W1710709405
LDRE01000039
Actinomycetota
Rothia kristinae [LDRE]
6950
7034
+
Tyr
GTA
[ENA]
¡û
>W1710709481
LDRG01000020
Actinomycetota
Rothia kristinae [LDRG]
6989
7073
+
Tyr
GTA
[ENA]
¡û
>W1710709639
LDRJ01000180
Actinomycetota
Rothia kristinae [LDRJ]
1093
1009
-
Tyr
GTA
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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