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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127134 (90 seq.)
>A171000094
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
936781
936855
+
Pro
TGG
-
¡û
>A171000903
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1317335
1317409
+
Pro
TGG
-
¡û
>A171000944
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2351071
2350996
-
Pro
TGG
-
¡û
>A171002033
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2442946
2442867
-
Pro
TGG
-
¡û
>A171002236
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
261713
261789
+
Pro
TGG
-
¡û
>A171004002
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2132100
2132024
-
Pro
TGG
-
¡û
>A171006559
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1547964
1547889
-
Pro
TGG
-
¡û
>A171007302
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224217
224293
+
Pro
TGG
-
¡û
>A171007356
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1603684
1603760
+
Pro
TGG
-
¡û
>A171007387
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
260717
260793
+
Pro
TGG
-
¡û
>A171007648
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
266143
266220
+
Pro
TGG
-
¡û
>A171007706
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1324942
1325016
+
Pro
TGG
-
¡û
>WENV180221382
OBAY01041027
[OBAY] human gut metagenome; human gut
111
187
+
Pro
TGG
[ENA]
¢þ
>WENV180222558
OBBD01031369
[OBBD] human gut metagenome; human gut
268
344
+
Pro
TGG
[ENA]
¢þ
>WENV180240454
OBDD01000101
[OBDD] human gut metagenome; human gut
72
148
+
Pro
TGG
[ENA]
¢þ
>WENV180335727
OBLG01000208
[OBLG] human gut metagenome; human gut
40133
40209
+
Pro
TGG
[ENA]
¢þ
>WENV180545614
OCIU01000008
[OCIU] human gut metagenome; human gut
224172
224096
-
Pro
TGG
[ENA]
¢þ
>WENV180578399
OCMB01130194
[OCMB] human gut metagenome; human gut
108
32
-
Pro
TGG
[ENA]
¢þ
>WENV180656724
OCVV010590465
[OCVV] gut metagenome; gut
1277
1201
-
Pro
TGG
[ENA]
¢þ
>WENV180656731
OCVV010590465
[OCVV] gut metagenome; gut
1277
1201
-
Pro
TGG
[ENA]
¢þ
>WENV180871501
ODLN01081411
[ODLN] human metagenome; G_DNA_Stool
189
114
-
Pro
TGG
[ENA]
¢þ
>WENV181229909
OFEK01000116
[OFEK] activated sludge metagenome; Anaerobic digester
14266
14341
+
Pro
TGG
[ENA]
¢þ
>WENV181230174
OFEK01000389
[OFEK] activated sludge metagenome; Anaerobic digester
3110
3184
+
Pro
TGG
[ENA]
¢þ
>WENV181312412
OFJB01109459
[OFJB] sludge metagenome; sludge
513
438
-
Pro
TGG
[ENA]
¢þ
>WENV181336081
OFMD01000010
[OFMD] human gut metagenome; human gut
167502
167578
+
Pro
TGG
[ENA]
¢þ
>WENV181416283
OGCL01068187
[OGCL] hot springs metagenome; Hot spring water
262
188
-
Pro
TGG
[ENA]
¢þ
>WENV181905108
OGXX01091345
[OGXX] human gut metagenome; faeces
394
470
+
Pro
TGG
[ENA]
¢þ
>WENV182127306
OHJU01013109
[OHJU] human gut metagenome; feces
495
419
-
Pro
TGG
[ENA]
¢þ
>WENV182180324
OHNO01000470
[OHNO] human gut metagenome; feces
10748
10824
+
Pro
TGG
[ENA]
¢þ
>WENV182235451
OHRT01000187
[OHRT] human gut metagenome; feces
336
412
+
Pro
TGG
[ENA]
¢þ
>WENV182289247
OHVU01033656
[OHVU] human gut metagenome; feces
304
228
-
Pro
TGG
[ENA]
¢þ
>WENV182290261
OHVX01008956
[OHVX] human gut metagenome; feces
909
833
-
Pro
TGG
[ENA]
¢þ
>WENV182397986
OIEN01000219
[OIEN] human gut metagenome; human gut
9142
9066
-
Pro
TGG
[ENA]
¢þ
>WENV182662561
OJMO01000001
[OJMO] human gut metagenome; feces
289785
289861
+
Pro
TGG
[ENA]
¢þ
>WENV182884043
OKSC01000004
[OKSC] human gut metagenome; faeces
264722
264798
+
Pro
TGG
[ENA]
¢þ
>WENV182899744
OKST01000921
[OKST] human gut metagenome; feces
14440
14364
-
Pro
TGG
[ENA]
¢þ
>WENV183160221
OLOV01000004
[OLOV] human gut metagenome; faeces
129881
129957
+
Pro
TGG
[ENA]
¢þ
>WENV183172091
OLPC01003421
[OLPC] human gut metagenome; faeces
1191
1267
+
Pro
TGG
[ENA]
¢þ
>WENV183222790
OLQM01003096
[OLQM] human gut metagenome; faeces
164
88
-
Pro
TGG
[ENA]
¢þ
>WENV183293067
OLSK01000009
[OLSK] human gut metagenome; faeces
191943
192019
+
Pro
TGG
[ENA]
¢þ
>WENV183295299
OLSL01000665
[OLSL] human gut metagenome; faeces
4976
5052
+
Pro
TGG
[ENA]
¢þ
>WENV183382835
OLYL01021282
[OLYL] human gut metagenome; feces
874
798
-
Pro
TGG
[ENA]
¢þ
>WENV183399693
OLZQ01030714
[OLZQ] human gut metagenome; feces
121
45
-
Pro
TGG
[ENA]
¢þ
>WENV183425592
OMBK01031753
[OMBK] human gut metagenome; feces
374
450
+
Pro
TGG
[ENA]
¢þ
>WENV183439018
OMCF01021282
[OMCF] human gut metagenome; feces
874
798
-
Pro
TGG
[ENA]
¢þ
>WENV183460580
OMDQ01013898
[OMDQ] human gut metagenome; feces
136
60
-
Pro
TGG
[ENA]
¢þ
>WENV183518956
OMNT01000025
[OMNT] human gut metagenome; faeces
11573
11497
-
Pro
TGG
[ENA]
¢þ
>WENV183644578
OQVP01029370
[OQVP] human gut metagenome; human gut
647
723
+
Pro
TGG
[ENA]
¢þ
>WENV183775365
PPYF01065607
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1871
1947
+
Pro
TGG
[ENA]
¢þ
>WENV183786697
PPYF01306028
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11280
11204
-
Pro
TGG
[ENA]
¢þ
>WENV170021187
BBPF01003774
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2611
2688
+
Pro
TGG
[ENA]
¢þ
>At0909
CP000678
Euryarchaeota
Methanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
878691
878617
-
Pro
TGG
[Ensembl]
¡û
>At1590
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1550685
1550611
-
Pro
TGG
[Ensembl]
¡û
>At1657
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
954020
954094
+
Pro
TGG
[Ensembl]
¡û
>WENV170645902
JPYU01206008
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
124
50
-
Pro
TGG
[ENA]
¢þ
>WENV170646126
JQGF01103221
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
152
226
+
Pro
TGG
[ENA]
¢þ
>WENV170651575
JRYF01094348
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
896
822
-
Pro
TGG
[ENA]
¢þ
>WENV170668853
LAHQ01067305
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
127
51
-
Pro
TGG
[ENA]
¢þ
>WENV170668916
LAHQ01119733
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
216
290
+
Pro
TGG
[ENA]
¢þ
>WENV170669262
LAHR01073489
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
1
75
+
Pro
TGG
[ENA]
¢þ
>WENV170676688
LDZS01001915
[LDZS] terrestrial metagenome; oil reservoir sample K3
4466
4392
-
Pro
TGG
[ENA]
¢þ
>WENV170677301
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14613
14537
-
Pro
TGG
[ENA]
¢þ
>WENV170972470
MTKX01031377
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
992
916
-
Pro
TGG
[ENA]
¢þ
>WENV170978686
MTKZ01058273
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1581
1505
-
Pro
TGG
[ENA]
¢þ
>W1910230527
FOTL01000002
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
91366
91291
-
Pro
TGG
[ENA]
¡û
>W1910574917
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
598625
598700
+
Pro
TGG
[ENA]
¡û
>W1910574945
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
596959
597034
+
Pro
TGG
[ENA]
¡û
>W1910575084
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
105588
105664
+
Pro
TGG
[ENA]
¡û
>W1910576007
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
8605
8680
+
Pro
TGG
[ENA]
¡û
>W1910583636
JXMW01000028
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
39530
39606
+
Pro
TGG
[ENA]
¡û
>W1910635143
LMVM01000023
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
322804
322879
+
Pro
TGG
[ENA]
¡û
>W1910635169
LMVN01000021
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
26736
26812
+
Pro
TGG
[ENA]
¡û
>W1910646600
LWMS01000001
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
26868
26944
+
Pro
TGG
[ENA]
¡û
>W1910655441
LZPM01000006
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
86320
86395
+
Pro
TGG
[ENA]
¡û
>W1910656134
MAIF01000129
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
723
648
-
Pro
TGG
[ENA]
¡û
>W1910899163
NGJK01000083
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
732
657
-
Pro
TGG
[ENA]
¡û
>W1910938906
NIZT01000060
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
1115
1040
-
Pro
TGG
[ENA]
¡û
>W1911722796
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
287845
287771
-
Pro
TGG
[ENA]
¡û
>W1610002482
AELP01000011
Euryarchaeota
Methanobrevibacter smithii TS146D [AELP]
32828
32752
-
Pro
TGG
[ENA]
¡û
>W1610006248
AMGN01000088
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
473
397
-
Pro
TGG
[ENA]
¡û
>W1610011008
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
58886
58962
+
Pro
TGG
[ENA]
¡û
>W1610045142
BBBD01000133
Euryarchaeota
Methanobrevibacter arboriphilus JCM 9315 [BBBD]
4830
4906
+
Pro
TGG
[ENA]
¡û
>W1610049137
BBES01000002
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
207439
207515
+
Pro
TGG
[ENA]
¡û
>W1610049174
BBET01000004
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
2944
3020
+
Pro
TGG
[ENA]
¡û
>W1610083224
CBVX010000002
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
43678
43754
+
Pro
TGG
[ENA]
¡û
>W1610612470
LGEU01000006
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
3097
3173
+
Pro
TGG
[ENA]
¡û
>W1610613855
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14613
14537
-
Pro
TGG
[ENA]
¡û
>W1610990667
LWMT01000066
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
18372
18298
-
Pro
TGG
[ENA]
¡û
>W1610990746
LWMV01000212
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
9882
9808
-
Pro
TGG
[ENA]
¡û
>W1610990777
LWMW01000126
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
58277
58202
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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