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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127137 (63 seq.)
>W131211414
ATMR01000042
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
10969
11046
+
Val
TAC
[ENA]
¡û
>W131211415
ATMR01000042
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
11093
11168
+
Val
TAC
[ENA]
¡û
>WENV180374759
OBOK01012283
[OBOK] marine metagenome; seawater
27
102
+
Val
TAC
[ENA]
¢þ
>WENV180589708
OCOS01007668
[OCOS] marine metagenome; Sterile flask
240
315
+
Val
TAC
[ENA]
¢þ
>W141276333
JADR01000010
Bacteroidota
Olleya marilimosa CAM030 [JADR]
16171
16248
+
Val
TAC
[ENA]
¡û
>W141276334
JADR01000010
Bacteroidota
Olleya marilimosa CAM030 [JADR]
16349
16426
+
Val
TAC
[ENA]
¡û
>W141276346
JADS01000010
Bacteroidota
Olleya sp. VCSA23 [JADS]
16319
16396
+
Val
TAC
[ENA]
¡û
>W141276388
JADT01000008
Bacteroidota
Olleya sp. VCSM12 [JADT]
16346
16423
+
Val
TAC
[ENA]
¡û
>WENV183615856
OOEB01192373
[OOEB] marine metagenome; sea ice
148
73
-
Val
TAC
[ENA]
¢þ
>WENV183711651
PDWI01075493
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
612
687
+
Val
TAC
[ENA]
¢þ
>WENV183713059
PDWI01122915
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1499
1424
-
Val
TAC
[ENA]
¢þ
>WENV170297770
CESF01003472
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
79281
79204
-
Val
TAC
[ENA]
¢þ
>WENV170315140
CESO01071604
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
217
+
Val
TAC
[ENA]
¢þ
>WENV170534884
CEWP01004415
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
157
80
-
Val
TAC
[ENA]
¢þ
>WENV170596498
FUHQ01000102
[FUHQ] jellyfish metagenome; jellyfish
2337
2260
-
Val
TAC
[ENA]
¢þ
>WENV170623374
FUWD013148729
[FUWD] metagenome; unknown
728
805
+
Val
TAC
[ENA]
¢þ
>WENV170631643
FUWD013359864
[FUWD] metagenome; unknown
728
805
+
Val
TAC
[ENA]
¢þ
>WENV170924124
MDTG01060392
[MDTG] marine metagenome; seawater
15838
15915
+
Val
TAC
[ENA]
¢þ
>WENV170924125
MDTG01060392
[MDTG] marine metagenome; seawater
16014
16091
+
Val
TAC
[ENA]
¢þ
>C181113329
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
4291961
4291886
-
Val
TAC
-
¡û
>C181113330
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
4291635
4291560
-
Val
TAC
-
¡û
>C181113349
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
19057
19132
+
Val
TAC
-
¡û
>C181202831
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1556491
1556416
-
Val
TAC
-
¡û
>C191166159
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2302050
2302125
+
Val
TAC
-
¡û
>C191166165
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2627052
2627127
+
Val
TAC
-
¡û
>W1910693677
MDGO01000027
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
16217
16292
+
Val
TAC
[ENA]
¡û
>W1910693678
MDGO01000027
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
16394
16469
+
Val
TAC
[ENA]
¡û
>W1910923779
NIHE01000005
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
9903
9978
+
Val
TAC
[ENA]
¡û
>W1910935652
NIXN01000005
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
7564
7639
+
Val
TAC
[ENA]
¡û
>W1810157343
PJBW01000012
Bacteroidota
Olleya sp. 1-3 [PJBW]
16018
16093
+
Val
TAC
[ENA]
¡û
>W1810157344
PJBW01000012
Bacteroidota
Olleya sp. 1-3 [PJBW]
16201
16276
+
Val
TAC
[ENA]
¡û
>W1810161382
PJEO01000041
Bacteroidota
Confluentibacter flavum 3B [PJEO]
10446
10521
+
Val
TAC
[ENA]
¡û
>W1810385505
PXOQ01000012
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
17842
17767
-
Val
TAC
[ENA]
¡û
>W1810679227
QKPO01000001
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
9866
9941
+
Val
TAC
[ENA]
¡û
>W1810759632
QPJO01000006
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
11102
11177
+
Val
TAC
[ENA]
¡û
>W1810759633
QPJO01000006
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
11226
11301
+
Val
TAC
[ENA]
¡û
>W1810787639
QRDV01000009
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
188031
187956
-
Val
TAC
[ENA]
¡û
>W1810788350
QREI01000006
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
263091
263016
-
Val
TAC
[ENA]
¡û
>W1810788351
QREI01000006
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
262967
262892
-
Val
TAC
[ENA]
¡û
>W1810885426
QUNH01000004
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
11122
11197
+
Val
TAC
[ENA]
¡û
>C151018437
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
310570
310493
-
Val
TAC
[Ensembl]
¡û
>C151018438
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
310377
310300
-
Val
TAC
[Ensembl]
¡û
>W1511388574
JSWF01000026
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
18430
18505
+
Val
TAC
[ENA]
¡û
>W1511534138
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
3149546
3149623
+
Val
TAC
[ENA]
¡û
>W1610060568
BCBW01000025
Bacteroidota
Olleya sp. ITB9 [BCBW]
143318
143241
-
Val
TAC
[ENA]
¡û
>W1610632946
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
189097
189172
+
Val
TAC
[ENA]
¡û
>W1610632947
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
189271
189346
+
Val
TAC
[ENA]
¡û
>W1610632971
LIQH01000025
Bacteroidota
Lacinutrix algicola [LIQH]
265
190
-
Val
TAC
[ENA]
¡û
>W1610632972
LIQH01000025
Bacteroidota
Lacinutrix algicola [LIQH]
90
15
-
Val
TAC
[ENA]
¡û
>W1610633002
LIQI01000017
Bacteroidota
Lacinutrix himadriensis [LIQI]
17627
17702
+
Val
TAC
[ENA]
¡û
>W1610633003
LIQI01000017
Bacteroidota
Lacinutrix himadriensis [LIQI]
18172
18247
+
Val
TAC
[ENA]
¡û
>WENV078360
AAGA01002039
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
252
175
-
Val
TAC
[ENA]
>W1710057823
BCBW01000025
Bacteroidota
Olleya sp. ITB9 [BCBW]
143318
143241
-
Val
TAC
[ENA]
¡û
>W1710516998
FNCZ01000007
Bacteroidota
Winogradskyella thalassocola [FNCZ]
25893
25970
+
Val
TAC
[ENA]
¡û
>W1710516999
FNCZ01000007
Bacteroidota
Winogradskyella thalassocola [FNCZ]
26017
26092
+
Val
TAC
[ENA]
¡û
>W1710565820
FORM01000008
Bacteroidota
Olleya namhaensis [FORM]
211122
211045
-
Val
TAC
[ENA]
¡û
>W1710565821
FORM01000008
Bacteroidota
Olleya namhaensis [FORM]
210939
210862
-
Val
TAC
[ENA]
¡û
>W1710767378
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
189097
189172
+
Val
TAC
[ENA]
¡û
>W1710767379
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
189271
189346
+
Val
TAC
[ENA]
¡û
>W1710767403
LIQH01000025
Bacteroidota
Lacinutrix algicola [LIQH]
265
190
-
Val
TAC
[ENA]
¡û
>W1710767404
LIQH01000025
Bacteroidota
Lacinutrix algicola [LIQH]
90
15
-
Val
TAC
[ENA]
¡û
>W1710767434
LIQI01000017
Bacteroidota
Lacinutrix himadriensis [LIQI]
17627
17702
+
Val
TAC
[ENA]
¡û
>W1710767435
LIQI01000017
Bacteroidota
Lacinutrix himadriensis [LIQI]
18172
18247
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK